Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00274 ATGGGAAACTGCTTCTCCGAAGTCGCCGCCGGTCGCGCCGCAATCGGCGGCACCGCCGGCGATTTCCGCAATCCGGCCGGCGCTCCAAACGACGCCGTCGAGAACTTCCTCAGGTCTCGCGGCCACCACGGCCTCTTCTCTCAGATCGAGTTGTCGTTTTCCGCTTCTGGATTGCGTGATCGCGATGTGCTCTTCAAGAGTAATCCGATGATGGTTCTTTATACAAGAGGAAAAAATGGAGCACTTCAGGAACTTCGCCGCACAGAAGTAGTTCCAAATTCATCGAGTCCCACATGGATTACTAAACACACCCTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGTAGATGTAAAGATGCTTGAGCTAGAAGAGCAGCAATTTCTTGGCGAGGCAACCTGTGTACTATCTCAGATAATCACACAACCTAATCAATCATTGACTATAGATCTACACACAGAAGATTCTATCATATCTACGTCTACCCTTGCCAAAAACTCTGGGAAACTCTCAGTGCATGCTGAGGAATGTGTTAGCTCAAAGACTTCAGTAGAGATGGCATTCAGGTGTTCAGATTTGGAATACAAGGATCTTTTCTCAAGAAATGATCCCTTTTTATTGATATCAAAAGTTGCGGAAGGTGGTGCCCAAATTCCAATTTGCAAAACAGAAGTTATAAGGAATGATCTCAACCCGATATGGAAGTCAGTGTTCGTGAATATTCAACAAGTAGGAAGTAAGGACAGCCCTTTGATAATAGAGTGCTATAACTTTAATAGCAATGGAAAACATGATTTAATGGGAAAAGTAGAGAAATCTTTGGCGGAGTTGGAGAATATTCATAATAACGGCCAGGGAGAAAATTTATTTTTGCCTTCTGCTGGTGGACAAAGCCATAATAACAAGGTGTTAAAGAGCCAACTATTTGTGGACAAATTTACTGAAAGTGTCCAATATACTTTCTTGGATTACTTGGTGGGGGGATTTGAATTGAACTTCATGGTGGCTGTTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATATCAGAAAGCTATTGTTGAGGTTGGGGAAGTGTTACAGTTTTATGATTCAGACAAACGATTTCCCACTTGGGGATTTGGTGCACGACCAATTGATGGTCCTGTTTCCCATTGTTTCAACTTGAATGGAAGTAGTCATTACTGTGAGGTGGAAGGGATCCAAGGAATTATGATGGCTTACACAAGTGCCCTGCATAATGTATCTCTTGCAGGTCCTACTCTTTTTGGACCTGTCATAAGCACTGCTGCGTTGATTGCCAGCCAATCTGTAGCAAATGGCCAAAGAAAGTACTTTGTTTTATTAATAATCACAGATGGAGTAGTTACAGATCTCCAAGAAACAAAAGAGGCTATTGTTAAAGCATCTGACCTGCCATTATCAATCCTTATTGTTGGGGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCAGACAAGGGAGAGAGGCTAGAAAGTTCATATGGACGCGTTGCCTCACGTGATATAGTCCAATTTGTACCATTTCGTGAGGTTCAAAGTGGAGAGTTTTCAGTTGTTCAAGCACTTCTAGCAGAATTACCGAGTCAATTTTTAACTTACGTGCGGAGCAGAAATATTCAACCGAGCCTCTAG 1746 0.4244 MGNCFSEVAAGRAAIGGTAGDFRNPAGAPNDAVENFLRSRGHHGLFSQIELSFSASGLRDRDVLFKSNPMMVLYTRGKNGALQELRRTEVVPNSSSPTWITKHTLIYHFEVVQVLVFRVYDVDTQFHNVDVKMLELEEQQFLGEATCVLSQIITQPNQSLTIDLHTEDSIISTSTLAKNSGKLSVHAEECVSSKTSVEMAFRCSDLEYKDLFSRNDPFLLISKVAEGGAQIPICKTEVIRNDLNPIWKSVFVNIQQVGSKDSPLIIECYNFNSNGKHDLMGKVEKSLAELENIHNNGQGENLFLPSAGGQSHNNKVLKSQLFVDKFTESVQYTFLDYLVGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQKAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALHNVSLAGPTLFGPVISTAALIASQSVANGQRKYFVLLIITDGVVTDLQETKEAIVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSYGRVASRDIVQFVPFREVQSGEFSVVQALLAELPSQFLTYVRSRNIQPSL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00274 581 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 169 IPR035892 -
Cca03g00274 581 CDD C2B_Copine 197 290 IPR037768 -
Cca03g00274 581 ProSiteProfiles C2 domain profile. 179 303 IPR000008 -
Cca03g00274 581 CDD C2A_Copine 47 166 - -
Cca03g00274 581 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 580 - -
Cca03g00274 581 Pfam Copine 364 579 IPR010734 -
Cca03g00274 581 Gene3D C2 domain 201 324 IPR035892 -
Cca03g00274 581 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Cca03g00274 581 ProSiteProfiles VWFA domain profile. 345 560 IPR002035 -
Cca03g00274 581 SMART C2_3c 48 161 IPR000008 -
Cca03g00274 581 SMART C2_3c 200 299 IPR000008 -
Cca03g00274 581 Gene3D C2 domain 52 200 IPR035892 -
Cca03g00274 581 Pfam C2 domain 54 158 IPR000008 -
Cca03g00274 581 Pfam C2 domain 202 294 IPR000008 -
Cca03g00274 581 PANTHER COPINE 1 580 IPR045052 GO:0005544
Cca03g00274 581 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 295 IPR035892 -
Cca03g00274 581 SMART VWA_4 343 540 IPR002035 -
Cca03g00274 581 CDD vWA_copine_like 313 568 IPR010734 -
Cca03g00274 581 SUPERFAMILY vWA-like 344 526 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00274 Cca-Chr3 4007524 4016450 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00274 - - gmx:100799074 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00274 03 4007524 4016450 Cca03g00274 03 4007524 4016450 ECH
Cca09g02351 09 48805918 48813618 Cca03g00274 03 4007524 4016450 PCT