Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02349 ATGATAATAACGGTCGACAAGTTTTTTCACAAAATCACTCGTTTGATTCCTTGGGTGCAGGATGAGGATGATTTGACGCTTAGAAGATTCCTGCGTGCTCGTGAGTTAGATGTGGAGAAGGCTTCAGCAATGTTCCTGAAGTACTTGAAATGGAGACATTCTTTTGTTCCAAACGGTTCTATATCTATCTCAGACATTCCTAACGAACTTGCACAGGACAAGGTATTCGTGCAAGGACACGACAAGACAGGTCGACCTATATTCATTGTCTTCGGTAGAAAACACTTTCAGAACAAAGATGGTCTAGATGAATTCAAACGGTTTGTAGTCTATGTTCTTGATAAATTATGTGCTAGTATGCCACCTGGGCAAGAAAAGTTTGTTGGTATAGCAGAACTTAAAGGTTGGGGATACTCTAACAGTGACGTGCGTGGATACGTTAGTGCTCTAAGCATTTTGCAGGATTACTACCCCGAAAGATTGGGGAAGTTGTTTATTGTCAATGCACCATACATTTTTATGAAAGTGTGGCAAATTGTTTACCCGTTCATTGACAACAAAACCAAGAAGAAGATAGTATTTGTGGAGAAAAATAAAGTGAAATCAACCCTGCTAGAAGAAATAGACCACAGTCAGCTCCCAGAGATATACGGTGGCCAACTGTCATTAGTCCCGATTCAAGATAGCTAA 690 0.4029 MIITVDKFFHKITRLIPWVQDEDDLTLRRFLRARELDVEKASAMFLKYLKWRHSFVPNGSISISDIPNELAQDKVFVQGHDKTGRPIFIVFGRKHFQNKDGLDEFKRFVVYVLDKLCASMPPGQEKFVGIAELKGWGYSNSDVRGYVSALSILQDYYPERLGKLFIVNAPYIFMKVWQIVYPFIDNKTKKKIVFVEKNKVKSTLLEEIDHSQLPEIYGGQLSLVPIQDS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02349 229 Gene3D - 12 228 IPR036865 -
Cca09g02349 229 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 14 229 - -
Cca09g02349 229 SUPERFAMILY CRAL/TRIO domain 66 222 IPR036865 -
Cca09g02349 229 CDD SEC14 75 220 IPR001251 -
Cca09g02349 229 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 63 225 IPR001251 -
Cca09g02349 229 Pfam CRAL/TRIO domain 74 219 IPR001251 -
Cca09g02349 229 SUPERFAMILY CRAL/TRIO N-terminal domain 6 58 IPR036273 -
Cca09g02349 229 SMART sec14_4 69 222 IPR001251 -
Cca09g02349 229 SMART CRAL_TRIO_N_2 23 48 IPR011074 -
Cca09g02349 229 PANTHER OS03G0850700 PROTEIN 14 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02349 Cca-Chr9 48788188 48789991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02349 26 214 Acyl Lipid Metabolism Gene Families AT5G47730 28.293 1.05e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02349 - - gmx:100796822 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00271 03 3957170 3960396 Cca09g02349 09 48788188 48789991 ECH
Cca09g02349 09 48788188 48789991 Cca09g02349 09 48788188 48789991 ECH
Cca09g02349 09 48788188 48789991 Cca03g00271 03 3957170 3960396 PCT