Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00271 ATGGAGGGTGAGCCTGAGCCTAATTCCCAACTCAAAGACAGCACCGACGCTGAACTCTCCAAAATTCGTCTCATGAGAGCCTTCGTTGAAGCCAGAGATCCCTCTTCTAAGGAAGTAGATGATTTGATGATTAGAAGATTCTTGCGTGCTCGTGATTTGGATGTGGAGAAGGCCTCGGCAATGTTCCTCAAGTACTTGAAATGGAAACGTTCATTTGTTCCAAATGGTTATATATCCCCCTCAGAGATTGCCGAAGATATTGCACATGACAAGATGTTCGTGCAAGGGGTCGACAAGAAGGGTCGACCTATAGCTATTGCCTTTGCTGCGAAACATTTTCAAAGCAAAAATGGTCCAGAGGGATTCAAACGGTATGTAGTCTTTGCTCTTGAGAAGCTATGTTCAAGAATGCCACCGGGGCAAGAAAAGTTTCTTGCCATTGCAGACGTTAAGGGATGGGGATATGCAAACAGTGACCTTCGTGGATACCTTAATTCTCTATCCATTTTGCAGGATTGTTACCCCGAAAGATTGGGGAAGTTGTTTATTGTACACGCACCTTATATGTTTATGAAAGTTTGGAAAATTGTTTACCCTTTCATTGACGACAATACCAAGAGAAAGATAGTATTCGTGGAAAACAAAAAGCTGAAATCAACACTGCTGGAAGAGATAGATGAGAGTCAACTCCCAGAAATATATGGGGGACAAATGCCATTAGTTCCTATCCAAGATAGCTAA 741 0.4251 MEGEPEPNSQLKDSTDAELSKIRLMRAFVEARDPSSKEVDDLMIRRFLRARDLDVEKASAMFLKYLKWKRSFVPNGYISPSEIAEDIAHDKMFVQGVDKKGRPIAIAFAAKHFQSKNGPEGFKRYVVFALEKLCSRMPPGQEKFLAIADVKGWGYANSDLRGYLNSLSILQDCYPERLGKLFIVHAPYMFMKVWKIVYPFIDDNTKRKIVFVENKKLKSTLLEEIDESQLPEIYGGQMPLVPIQDS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00271 246 SUPERFAMILY CRAL/TRIO domain 81 239 IPR036865 -
Cca03g00271 246 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 80 242 IPR001251 -
Cca03g00271 246 Gene3D - 5 245 IPR036865 -
Cca03g00271 246 SMART sec14_4 86 239 IPR001251 -
Cca03g00271 246 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 10 246 - -
Cca03g00271 246 Pfam CRAL/TRIO domain 90 236 IPR001251 -
Cca03g00271 246 SMART CRAL_TRIO_N_2 40 65 IPR011074 -
Cca03g00271 246 CDD SEC14 93 237 IPR001251 -
Cca03g00271 246 PANTHER OS03G0850700 PROTEIN 10 246 - -
Cca03g00271 246 SUPERFAMILY CRAL/TRIO N-terminal domain 10 77 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00271 Cca-Chr3 3957170 3960396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00271 46 232 Acyl Lipid Metabolism Gene Families AT5G47730 27.094 9.86e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00271 - - gmx:100797666 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00271 03 3957170 3960396 Cca09g02349 09 48788188 48789991 ECH
Cca03g00271 03 3957170 3960396 Cca03g00271 03 3957170 3960396 ECH
Cca09g02349 09 48788188 48789991 Cca03g00271 03 3957170 3960396 PCT