Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02325 ATGGCCGAGGAGGCTTCCAACCAAACCAACACGCCACCTCCCCCAACAGCACAAGAGTCAGTGGTGCAAGTGGAAGAAGTTGTGCTAACTGATGTTCCAAAAACCACTGTTCCAGTGGAAAGAGATTCACAGCCGCAACCTGAACCCGAGCCAGAGAAGAAGCCCGTTGAAGAAAACGTCACTCTCGAGACTCACCTCTCCAAACCCAACACCGATGACAGCACCGATGATAAGATCCCTGAGTTCAAGGAAGAAAGCACCAAACTTTCTGAACTGCCGGAGAACGAGAACAAGGCCCTTCAAGAGCTTAAGAAGCTCGTTCAAGAGGCACTCAACAACCACGAGTTTTTTTCCAAGGAAGAAAAGAAaccaccaccgccaccaacaacaacaacaacatcaacttctgagaaggaagaaccacagccacaacaacaagaagaagaaGTTGTAACTGAAGCTGATACTACCCCAGAAAAAACCGAGGAGAACCAAGTTgaaacaaagaaagaggaacaaggagaggaagaagaaaagaaggaggaagtgaaagaaacaaaggaagaagCTGCTGTGGATGACGATGGAGCAAAAACTGTGGAGGCCATTGAAGAGACCGTTGTTGCTGTCTCTTCTTCTGTTCAGCCTGAAGAGGAAGCTTCTAAACCAGAAGCCAAGGAAGAACCTTCATCACCACTTCCACCCGAAGAAGTTTCCATTTGGGGAATACCACTTCTTGCTGATGAGAGGAGCGATGTGATTCTGCTCAAGTTTCTGCGCGCGAGGGAGTTCAAGGTGAAGGAGGCGTTGGTGATGCTGAAGAACACGATCCGGTGGAGGAAAGAGTTTAAGATGGAGGAGCTGATGGAGGAGAAGCTGGGGGATGAGTTGGAGAAGGTGGTGTTCATGCATGGCTCTGACAAGGAGGGTCACCCTGTGTGTTACAACATCTATGGGGAGTTCCAGAACAAGGAGTTGTACAAGAAGACTTTTTCTGATGAGGAGAAGAGGGAGAAGTTCCTGAGGTGGAGAATTCAGTTCTTGGAGAAGAGTATAAGGAAGTTGGACTTCAACCCTGGTGGCATTTGCACCATTTTTCAGGTCAATGACCTCAAGAACTCTCCTGGACCTGCCAAGTGGGAACTTAGACAAGCCACCAAAAATGCACTTCAATTGCTTCAGGACAATTACCCTGAATTTGTTGCCAAACAGGTGTTCATTAATGTGCCATGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTTCTCACTCAGAGGACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAATCAACGGAAACCCTTTTGAGATACATAGCTCCGGAGCAGATTCCGGTGAAGTATGGAGGACTAAGCAAAGATGGGGAGTTCGGAAATAACGATGCTGTTACAGAAATCACAGTGAGGCCGGCAGCAAAACATACTGTGGAATTTCCAGTTACTGAGAACTGCTTACTCTCTTGGGAGCTTAGAGTAATAGGGTGGGAAGTAAGCTATGGTGCAGAATTTGTGCCAAGTTCAGAAGGAAGCTATACAGTGATTGTTCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGACCCAGTGCTTTGCAGCAGTTTCAAAGTTGGTGAACCAGGGAAAGTTGTTCTCACCATTGACAACACAAGTTCTAAGAAGAAGAAGCTCTTGTATCGCTTGAAGACCAAGTCCTCCGACTAA 1725 0.4313 MAEEASNQTNTPPPPTAQESVVQVEEVVLTDVPKTTVPVERDSQPQPEPEPEKKPVEENVTLETHLSKPNTDDSTDDKIPEFKEESTKLSELPENENKALQELKKLVQEALNNHEFFSKEEKKPPPPPTTTTTSTSEKEEPQPQQQEEEVVTEADTTPEKTEENQVETKKEEQGEEEEKKEEVKETKEEAAVDDDGAKTVEAIEETVVAVSSSVQPEEEASKPEAKEEPSSPLPPEEVSIWGIPLLADERSDVILLKFLRAREFKVKEALVMLKNTIRWRKEFKMEELMEEKLGDELEKVVFMHGSDKEGHPVCYNIYGEFQNKELYKKTFSDEEKREKFLRWRIQFLEKSIRKLDFNPGGICTIFQVNDLKNSPGPAKWELRQATKNALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLRYIAPEQIPVKYGGLSKDGEFGNNDAVTEITVRPAAKHTVEFPVTENCLLSWELRVIGWEVSYGAEFVPSSEGSYTVIVQKARKVASSEDPVLCSSFKVGEPGKVVLTIDNTSSKKKKLLYRLKTKSSD 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02325 574 Gene3D - 282 475 IPR036865 -
Cca09g02325 574 ProSiteProfiles GOLD domain profile. 469 570 IPR009038 -
Cca09g02325 574 MobiDBLite consensus disorder prediction 69 103 - -
Cca09g02325 574 SMART CRAL_TRIO_N_2 251 276 IPR011074 -
Cca09g02325 574 MobiDBLite consensus disorder prediction 1 235 - -
Cca09g02325 574 SUPERFAMILY CRAL/TRIO domain 300 462 IPR036865 -
Cca09g02325 574 PANTHER PATELLIN-3 PROTEIN 1 573 - -
Cca09g02325 574 SUPERFAMILY CRAL/TRIO N-terminal domain 88 291 IPR036273 -
Cca09g02325 574 MobiDBLite consensus disorder prediction 1 18 - -
Cca09g02325 574 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 290 465 IPR001251 -
Cca09g02325 574 Pfam CRAL/TRIO, N-terminal domain 235 275 IPR011074 -
Cca09g02325 574 Coils Coil 100 120 - -
Cca09g02325 574 SMART sec14_4 295 462 IPR001251 -
Cca09g02325 574 MobiDBLite consensus disorder prediction 45 61 - -
Cca09g02325 574 PANTHER PATELLIN-1 1 573 IPR044834 GO:0008289
Cca09g02325 574 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 470 570 IPR036598 -
Cca09g02325 574 Pfam CRAL/TRIO domain 299 459 IPR001251 -
Cca09g02325 574 Coils Coil 166 189 - -
Cca09g02325 574 MobiDBLite consensus disorder prediction 153 201 - -
Cca09g02325 574 Gene3D GOLD domain 476 570 - -
Cca09g02325 574 CDD SEC14 296 460 IPR001251 -
Cca09g02325 574 Gene3D - 170 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02325 Cca-Chr9 48571758 48575575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02325 255 454 Acyl Lipid Metabolism Gene Families AT1G55840 27.014 3.18e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02325 - - gmx:100788197 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02325 09 48571758 48575575 Cca03g00243 03 3569630 3572912 PCT