Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g00243 | ATGGCCATGGCCGAGGAACTTCAACAGACAAACATATCTCAAGACCAAGTGCTGCCAGTGGTCCCTCACGTGGCACCTGCTGACAAACCAGACACCAACGTTCTTGTCCCCGAGGacaaaaacacacaacacaaacaagaagaaaaagaagcctcgctggagaaggagaaggagaagaagaaTGCTGCTgaaaccgaaaccgaaaccgaaaccgaaaACGAGGTTTCCAAACCGGACGAGGCCATTCCGGAATCCGGCTCGTTCAAGGAAGAAAGCACCATCGTCTCCGACCTACCGGAATCCGAGAAGAAGGCTCTGCAGGAACTCAAGCACCTCGTTCAAGAAGCGCTCAGCAAACACGATTTCTCCGCAGCGGAGAAAGAAGGTGAGAGCGTGACGGCGGTGGCGGAGGAGAGTGCCGAAGAGGTTTCGATTTGGGGAGTGCCTCTGGTTGCGGACGAGAGGAGCGACGTGATTCTGCTCAAGTTTCTGCGCGCGAGGGACTTCAAGGTGAAGGAGGCGATGGCGATGATAAAGAGCACGATTCGGTGGAGGAAGGAGTTCGGGATGGAGGAGCTTTTGTTGGAGGAGTTGGGTGACGACGATTTGGCCAAAGCGGTTTACATGCATGGCTTTGACAAGGAGGGGCACCCCGTGTGTTACAATGTGTATGGTGAGTTTCAGGACAAGGAGCTTTACAAGAAGACCTTCTCCGATGAGGAGAAGAGGGTTAGGTTTCTGAGGTGGAGGATTCAGTTCCTGGAGAAGAGTATCAGGAAGCTGGATTTTGCACCTGGTGGGATATGCACCATTGTTCAGCTCAATGATCTTAAGAATTCTCCTGGACCTGCTAAGTGGGAGCTTAGACAGGCTACCAAACAGGCCCTGCAATTGCTTCAGGATAATTATCCTGAGTTTGTAGCCAAACAGCTGTTTATCAATGTACCGTGGTGGTACTTGGCAGTGAACAGGATGATAAGCCCTTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAATCGGCTGAGACTCTTTTGAGATACATTGCTGCGGAGCAACTTCCGGTTAAATATGGTGGACTAAGCAAAGATGGGGAATTTGGAATTTCCGATGCTGTTACAGAAATTACAGTGAAGCCAGCAGCAAAACATACCGTGGAGTTTCCGGTTACTGAGAGTTGCCTACTCTCTTGGGAGCTCAGAGTAATAGGGTGGGATGTAAGCTATGGTGCAGAGTTTGTGCCAACTTCAGAGGGAAGCTATACTGTGATAATCCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAACCAGTGCTTTGCAGCAATTATAAAATTGGTGAACCTGGGAAAGTGGTTCTCACCATTGACAATCAAAGCTCTAAGAAGAAAAAACTCTTGTACCGTTTGAAGGTCAAGCCTTCCTCTTCTGAATGA | 1449 | 0.461 | MAMAEELQQTNISQDQVLPVVPHVAPADKPDTNVLVPEDKNTQHKQEEKEASLEKEKEKKNAAETETETETENEVSKPDEAIPESGSFKEESTIVSDLPESEKKALQELKHLVQEALSKHDFSAAEKEGESVTAVAEESAEEVSIWGVPLVADERSDVILLKFLRARDFKVKEAMAMIKSTIRWRKEFGMEELLLEELGDDDLAKAVYMHGFDKEGHPVCYNVYGEFQDKELYKKTFSDEEKRVRFLRWRIQFLEKSIRKLDFAPGGICTIVQLNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQLFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKDGEFGISDAVTEITVKPAAKHTVEFPVTESCLLSWELRVIGWDVSYGAEFVPTSEGSYTVIIQKARKVASSEEPVLCSNYKIGEPGKVVLTIDNQSSKKKKLLYRLKVKPSSSE | 482 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g00243 | 482 | Pfam | CRAL/TRIO, N-terminal domain | 105 | 179 | IPR011074 | - | |
| Cca03g00243 | 482 | Gene3D | - | 202 | 380 | IPR036865 | - | |
| Cca03g00243 | 482 | SUPERFAMILY | CRAL/TRIO domain | 206 | 368 | IPR036865 | - | |
| Cca03g00243 | 482 | PANTHER | PATELLIN-1 | 140 | 481 | IPR044834 | GO:0008289 | |
| Cca03g00243 | 482 | PANTHER | PATELLIN-1 | 3 | 131 | IPR044834 | GO:0008289 | |
| Cca03g00243 | 482 | ProSiteProfiles | CRAL-TRIO lipid binding domain profile. | 191 | 371 | IPR001251 | - | |
| Cca03g00243 | 482 | PANTHER | PATELLIN-3 PROTEIN | 3 | 131 | - | - | |
| Cca03g00243 | 482 | PANTHER | PATELLIN-3 PROTEIN | 140 | 481 | - | - | |
| Cca03g00243 | 482 | MobiDBLite | consensus disorder prediction | 1 | 97 | - | - | |
| Cca03g00243 | 482 | SMART | CRAL_TRIO_N_2 | 156 | 181 | IPR011074 | - | |
| Cca03g00243 | 482 | CDD | SEC14 | 207 | 366 | IPR001251 | - | |
| Cca03g00243 | 482 | Gene3D | - | 94 | 187 | - | - | |
| Cca03g00243 | 482 | Pfam | CRAL/TRIO domain | 206 | 365 | IPR001251 | - | |
| Cca03g00243 | 482 | SUPERFAMILY | Supernatant protein factor (SPF), C-terminal domain | 376 | 478 | IPR036598 | - | |
| Cca03g00243 | 482 | Gene3D | GOLD domain | 381 | 477 | - | - | |
| Cca03g00243 | 482 | MobiDBLite | consensus disorder prediction | 33 | 86 | - | - | |
| Cca03g00243 | 482 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Cca03g00243 | 482 | ProSiteProfiles | GOLD domain profile. | 375 | 476 | IPR009038 | - | |
| Cca03g00243 | 482 | Coils | Coil | 41 | 73 | - | - | |
| Cca03g00243 | 482 | SUPERFAMILY | CRAL/TRIO N-terminal domain | 93 | 196 | IPR036273 | - | |
| Cca03g00243 | 482 | SMART | sec14_4 | 201 | 368 | IPR001251 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca03g00243 | Cca-Chr3 | 3569630 | 3572912 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca03g00243 | 160 | 360 | Acyl Lipid Metabolism Gene Families | AT1G55840 | 28.571 | 8.82e-12 | 63.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g00243 | - | - | ccaj:109787810 | 874.389 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca03g00243 | 03 | 3569630 | 3572912 | Cca03g00243 | 03 | 3569630 | 3572912 | ECH | |
| Cca09g02325 | 09 | 48571758 | 48575575 | Cca03g00243 | 03 | 3569630 | 3572912 | PCT |