Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02322 ATGTTGATGAACAATATTGGAGATCGTGTTTACCAGCAGGTGATTGATACGGGAATTATTGATATTCTTGTGAAAATTGTGAAGAAAAAATCAGACTTGCCTGTAAGGGAGAAGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCGTCTGGGAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGAGTGCTGGGGTGCAGTTTCCTCAAAGGGATCAAGTGACCCGATCAAATCGTCCTCGTACTCAACCTAGTAGGATTAACAATGTACCGAACAGGGAGCAGGCCCTGCCCAGACAACAGCAAGCAGAGTCCCAAACTGTTCCCGAATCTAGCATTATTCAAAAGGCTAGTAATGCATTAGAAGTTTTAAAAGAAGTCCTTGATGCTGTTGATGCCCAACATCCTCAGGCAGCAAGAGATGAATTCACCCTTGACCTTGTTGAACAGTGTTCATTTCAGAAGCAAAGAGTAATGCATCTTGTGTTGGCTTCTCGAGATGAGAGGATAGTTTCTCGAGCAATTGAATTAAACGAGCAACTTCAGCAAGTTCTTGCAAGACATGATAGCCTTCTTTTGGACAGAGGCACAACAATAGCTAATCACTTGAATTGTgaagaagaggaagaagaaccagaacaaTTATTTCGGAGATTACGCAAAGGAAAGGCTTGTGCAAGACCTGAACACGAAGAAAGTGAACCTGAGTTTCCTCACTTTGGAATGCTTGAAGAGAGACTCAACCGTCCATTAATAAGACCAATATCTTTGGAGCCATCTCGAGAAGCTAATACATGTCCTGCTCCTGCTGTGATTCCTCCTCGCATGGCGATTCCACCACCGCCTTCAAAGCACATTGAGAGGGAGAGATATTTTCTGGAAAATAGAAAGGATAGTGCTACTTTGGCTGGCCACTTGAGAGGACTCTCCTTGCATAGTCACAATGGTAGCAGCTCTCACAGTGGAAGCTTTGATTTTAGTGATTGA 1005 0.4179 MLMNNIGDRVYQQVIDTGIIDILVKIVKKKSDLPVREKIFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFPQRDQVTRSNRPRTQPSRINNVPNREQALPRQQQAESQTVPESSIIQKASNALEVLKEVLDAVDAQHPQAARDEFTLDLVEQCSFQKQRVMHLVLASRDERIVSRAIELNEQLQQVLARHDSLLLDRGTTIANHLNCEEEEEEPEQLFRRLRKGKACARPEHEESEPEFPHFGMLEERLNRPLIRPISLEPSREANTCPAPAVIPPRMAIPPPPSKHIERERYFLENRKDSATLAGHLRGLSLHSHNGSSSHSGSFDFSD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02322 334 MobiDBLite consensus disorder prediction 77 117 - -
Cca09g02322 334 ProSiteProfiles GAT domain profile. 111 199 IPR004152 GO:0035091|GO:0043130
Cca09g02322 334 PANTHER TOM1-LIKE PROTEIN 1 334 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cca09g02322 334 Gene3D - 1 82 IPR008942 -
Cca09g02322 334 ProSiteProfiles VHS domain profile. 1 75 IPR002014 GO:0035091|GO:0043130
Cca09g02322 334 Coils Coil 120 140 - -
Cca09g02322 334 Gene3D - 107 206 IPR038425 -
Cca09g02322 334 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 334 - -
Cca09g02322 334 SUPERFAMILY GAT-like domain 79 198 - -
Cca09g02322 334 SUPERFAMILY ENTH/VHS domain 1 77 IPR008942 -
Cca09g02322 334 Pfam GAT domain 125 198 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02322 Cca-Chr9 48535341 48540781 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02322 - - gmx:100802949 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02322 09 48535341 48540781 Cca03g00239 03 3529490 3535570 PCT