Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00239 ATGGCAGCTGAGCTAGTCAATGTTGCGACAAGCGAGAAACTAGCTGAAACTGATTGGACAAAAAATATTGAAATCTGTGAGTTAGTTGCTCACGATAAAAGGCAAGCTAGAGATGCTGTTAAAGCTATAAAAAAGAAACTAGGAAGCAAACACCCCAATACTCAACTTTATGCTGTCATGTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAAGTGATTGATACTGGAATTATTCCTATTCTAGTAAAAATTGTGAAGAAAAAGTCTGATTTGCCTGTGAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGAGTGCTGGAGTGCAGTTTCCTCAAAGCGATCAGGTGGTCCAATCAAATCATCCTAGTTCACAACCTAGTAGGACTAGTAATGTACCAAACAGGGAGCAGGCCGCACCTAGACATGAAGTGGTCGCTCAGCAAGCAGACTCCCAGACTGTCCCTGAATCTAGCATTATTCAAAAGGCTAGCAATGCATTAGAAGTACTAAAAGAGGTCCTTGATGCTGTTGATGCTCAAAATCCTCAGGGAGCAAGGGATGAATTCACCCTTGATCTTGTAGAACAATGTTCCTTTCAAAAGCAAAGGGTTATGCATCTTGTTATGGCTTCTAGAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTGCTGGCAGAGCTACAACAACTGCCCCTCGATTTGATCACGAAGAAGCTGAGGAGGAAGAGGAACCTGAACAGTTAGTTCGAAGATTGCGCAAGGGAAAGGCCTGTGCAAGGCCTGAAGATGAGGAGACTGAAACCACCGACATTCATCGCATGGGTTTGCTTGGAGAGAGGCTCAATCGTCCACTGATACGACCGCTCTCGTTAGAGCCGCCATCTCGAGAAGCCGATACTCGATCTCCACCTGTTGTGGTGCCACCGCCACGACCGAAGCAGAATGGGGAGGTTCCTCATGTAGCAATTCCACCACCACCTGCAAAGCACATGGAGAGGGAGAGGTTTTTTCAGGAAAACAAGGATGGTTCTAATTTGCCCGGCCACATGAGAGGCCTATCCTTGCATAGTCGTAATGGCAGCAGCTCTCACAGTGGAAGCTTTGATTTTAGTGACTGA 1245 0.4474 MAAELVNVATSEKLAETDWTKNIEICELVAHDKRQARDAVKAIKKKLGSKHPNTQLYAVMLLEMLMNNIGEHIHEQVIDTGIIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFPQSDQVVQSNHPSSQPSRTSNVPNREQAAPRHEVVAQQADSQTVPESSIIQKASNALEVLKEVLDAVDAQNPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQKVLARHDDLLAGRATTTAPRFDHEEAEEEEEPEQLVRRLRKGKACARPEDEETETTDIHRMGLLGERLNRPLIRPLSLEPPSREADTRSPPVVVPPPRPKQNGEVPHVAIPPPPAKHMERERFFQENKDGSNLPGHMRGLSLHSRNGSSSHSGSFDFSD 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00239 414 SUPERFAMILY ENTH/VHS domain 4 140 IPR008942 -
Cca03g00239 414 MobiDBLite consensus disorder prediction 287 319 - -
Cca03g00239 414 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Cca03g00239 414 MobiDBLite consensus disorder prediction 141 163 - -
Cca03g00239 414 Pfam VHS domain 5 111 IPR002014 GO:0035091|GO:0043130
Cca03g00239 414 Coils Coil 187 207 - -
Cca03g00239 414 MobiDBLite consensus disorder prediction 345 368 - -
Cca03g00239 414 Gene3D - 2 136 IPR008942 -
Cca03g00239 414 SUPERFAMILY GAT-like domain 144 267 - -
Cca03g00239 414 MobiDBLite consensus disorder prediction 272 414 - -
Cca03g00239 414 CDD VHS 2 130 - -
Cca03g00239 414 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 414 - -
Cca03g00239 414 PANTHER TOM1-LIKE PROTEIN 1 414 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cca03g00239 414 Pfam GAT domain 192 267 IPR004152 GO:0035091|GO:0043130
Cca03g00239 414 Gene3D - 176 274 IPR038425 -
Cca03g00239 414 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Cca03g00239 414 MobiDBLite consensus disorder prediction 141 184 - -
Cca03g00239 414 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Cca03g00239 414 CDD GAT_GGA_like_plant 186 264 - -
Cca03g00239 414 MobiDBLite consensus disorder prediction 397 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00239 Cca-Chr3 3529490 3535570 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00239 - - gmx:100785131 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00239 03 3529490 3535570 Cca03g00239 03 3529490 3535570 ECH
Cca09g02322 09 48535341 48540781 Cca03g00239 03 3529490 3535570 PCT