Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02263 ATGGATTCGAGTTCGGGGCATCAAGAATTCGATTATTTGTTCAAGTTGTTGATGATTGGAGACTCTGGGGTTGGCAAAAGTAGTCTTCTTCTCAGTTTCACCTCCGATGCTTTTGAAGATCTCTCGCCAACTATTGGTGTTGATTTTAAGGTCAAATATGTGACGATGGGGGGTAAAAAGCTTAAGCTTGCAATTTGGGATACTGCTGGTCAGGAGAGATTCAGGACGCTGACAAGTTCTTACTACCGAGGGGCACAAGGAATCATCATGGTTTACGATGTGACCCGGCGAGAAACATTTACAAATCTTTCTGAAATATGGGCAAAGGAAATAGACCTTTATTCAACAAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTAGATAAGGAGGGTTATAGAGTTGTGACAAAGAAAGAGGGAATAGACTTAGCCAGGGAATATGGTTGCCTATTTATCGAATGCAGTGCTAAAACTCGAGTTAACGTTCAGCAATGCTTTGAAGAGCTTGTTTTGAAGATTCTGGACACACCTAGCCTCTTAGCCGAGGGCTCAAAGGGTGTAAAAAAGAACATTTTTAAGGACAGACCACCCCAATCTGATGCATCCACAAGTAGTTGCTGCTGA 630 0.419 MDSSSGHQEFDYLFKLLMIGDSGVGKSSLLLSFTSDAFEDLSPTIGVDFKVKYVTMGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWAKEIDLYSTNQDCIKMLVGNKVDKEGYRVVTKKEGIDLAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGVKKNIFKDRPPQSDASTSSCC 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02263 209 ProSiteProfiles small GTPase Ras family profile. 9 209 IPR001806 GO:0003924|GO:0005525
Cca09g02263 209 PRINTS Transforming protein P21 ras signature 14 35 - -
Cca09g02263 209 PRINTS Transforming protein P21 ras signature 36 52 - -
Cca09g02263 209 PRINTS Transforming protein P21 ras signature 54 76 - -
Cca09g02263 209 PRINTS Transforming protein P21 ras signature 118 131 - -
Cca09g02263 209 PRINTS Transforming protein P21 ras signature 153 175 - -
Cca09g02263 209 SMART rab_sub_5 14 178 - -
Cca09g02263 209 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Cca09g02263 209 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 209 - -
Cca09g02263 209 ProSiteProfiles small GTPase Rab1 family profile. 9 209 - -
Cca09g02263 209 SMART rho_sub_3 16 178 IPR001806 GO:0003924|GO:0005525
Cca09g02263 209 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
Cca09g02263 209 PANTHER DRAB5-RELATED 1 209 - -
Cca09g02263 209 SMART ran_sub_2 19 204 - -
Cca09g02263 209 SMART ras_sub_4 11 178 - -
Cca09g02263 209 Gene3D - 7 209 IPR027417 -
Cca09g02263 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 182 IPR027417 -
Cca09g02263 209 SMART arf_sub_2 1 179 - -
Cca09g02263 209 CDD Rab18 14 175 - -
Cca09g02263 209 ProSiteProfiles small GTPase Rho family profile. 7 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02263 Cca-Chr9 47856090 47860955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02263 15 168 EF-hand Containing Proteins AT5G27540 24.684 7.93e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02263 K07910 - gmx:100787603 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02263 09 47856090 47860955 Cca03g00175 03 2649710 2654925 PCT