Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g00175 | ATGGATTCGAGTTCAACGCAAGAATTCGATTATTTGTTTAAGTTGTTGATGATTGGGGACTCGGGTGTTGGCAAGAGTAGTCTCCTCCTCTGTTTCACCTCTGATTCCTTTGAAGATCTCTCTCCCACAATTGGTGTTGATTTTAAGGTCAAGTATTTGATGATGGATGGTAAAAAGCTGAAGCTTGCCATTTGGGATACAGCTGGTCAAGAGAGATTCAGAACATTGACGAGTTCGTACTACCGAGGTGCACAAGGGATCATTATGGTTTATGATGTAACTCGGAGGGAAACGTTTACTGATCTCTCTGAAGTATGGTCTAAGGAAATAGAACTTTATTCAACAAATCCGGAATGCATCAAGATGCTCGTTGGAAACAAAGTGGATAAGGAGAGTGATAGAGTTGTAACAAAGAAAGAGGGAATAGACTTTGCCAGGGAATGTGGTTGCCTATTTACTGAATGCAGTGCTAAAACTCGAGTTAACGTACAACAATGCTTTGAAGAGCTTGTTCTGAAGATTCTGGATACACCTAGCCTCTTAGCCGAGGGCTCTAAGGGGGGTAAAAAGAACATTTTTAAGGACAAGCCATCACAGTCTGCATCCACAAGTAGTTGTTGCTGA | 624 | 0.4167 | MDSSSTQEFDYLFKLLMIGDSGVGKSSLLLCFTSDSFEDLSPTIGVDFKVKYLMMDGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTDLSEVWSKEIELYSTNPECIKMLVGNKVDKESDRVVTKKEGIDFARECGCLFTECSAKTRVNVQQCFEELVLKILDTPSLLAEGSKGGKKNIFKDKPSQSASTSSCC | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g00175 | 207 | ProSiteProfiles | small GTPase Ras family profile. | 3 | 207 | IPR001806 | GO:0003924|GO:0005525 | |
| Cca03g00175 | 207 | ProSiteProfiles | small GTPase Rab1 family profile. | 8 | 207 | - | - | |
| Cca03g00175 | 207 | SMART | ran_sub_2 | 18 | 203 | - | - | |
| Cca03g00175 | 207 | SMART | arf_sub_2 | 1 | 178 | - | - | |
| Cca03g00175 | 207 | PANTHER | SMALL GTPASE FAMILY RAB PROTEIN | 1 | 207 | - | - | |
| Cca03g00175 | 207 | TIGRFAM | small_GTP: small GTP-binding protein domain | 11 | 169 | IPR005225 | GO:0005525 | |
| Cca03g00175 | 207 | Gene3D | - | 5 | 207 | IPR027417 | - | |
| Cca03g00175 | 207 | PRINTS | Transforming protein P21 ras signature | 13 | 34 | - | - | |
| Cca03g00175 | 207 | PRINTS | Transforming protein P21 ras signature | 35 | 51 | - | - | |
| Cca03g00175 | 207 | PRINTS | Transforming protein P21 ras signature | 53 | 75 | - | - | |
| Cca03g00175 | 207 | PRINTS | Transforming protein P21 ras signature | 117 | 130 | - | - | |
| Cca03g00175 | 207 | PRINTS | Transforming protein P21 ras signature | 152 | 174 | - | - | |
| Cca03g00175 | 207 | CDD | Rab18 | 13 | 174 | - | - | |
| Cca03g00175 | 207 | ProSiteProfiles | small GTPase Rho family profile. | 6 | 175 | - | - | |
| Cca03g00175 | 207 | Pfam | Ras family | 14 | 175 | IPR001806 | GO:0003924|GO:0005525 | |
| Cca03g00175 | 207 | SMART | rho_sub_3 | 15 | 177 | IPR001806 | GO:0003924|GO:0005525 | |
| Cca03g00175 | 207 | SMART | ras_sub_4 | 10 | 177 | - | - | |
| Cca03g00175 | 207 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 8 | 181 | IPR027417 | - | |
| Cca03g00175 | 207 | PANTHER | DRAB5-RELATED | 1 | 207 | - | - | |
| Cca03g00175 | 207 | SMART | rab_sub_5 | 13 | 177 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca03g00175 | Cca-Chr3 | 2649710 | 2654925 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca03g00175 | 14 | 167 | EF-hand Containing Proteins | AT5G27540 | 27.329 | 3.20e-11 | 60.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g00175 | K07910 | - | gmx:100814725 | 394.045 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca09g02263 | 09 | 47856090 | 47860955 | Cca03g00175 | 03 | 2649710 | 2654925 | PCT |