Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02247 ATGGGTACTTCCTCACGTGCCGGAGAAAGCAGACACCGTTTTCCTGCATCCATTGTAGATTTATACAGACGAAGATTACCAAAAAGAAATGCAAAAGATGTAGAGAAGTCTATCCACTTATCCATCCAAGATAGAAGCTCAAGATGCAAATTCTCTTTCTTAAAACCTTTTGTCCAATTCATAACCATTTGCGGCACCTTTCTATTGCTCCTTTATTCTCCAAAGGTTTGCAACAACCATTTATCAAGCTCTAGCTCTGGGCCAAATTTTGTGAACAGATGGATATGGGGTGGCTCAGATCCTCGTTACACATCAAATGTAGATATTAACTGGGATGATATATCAAAAATTACAGAGAAACTGACAAGAAAAAAAGAAGTTCAAGGAATTGGCCTACTAAACTTCAATAAGACAGAGTTACACATATTGGAACAACTTATTCCTAATGCCACACATGTTGTTCTGGACCTAGAGTATGCTGCAAAAAATGTGACATGGGAATCCTTATACCCAGAATGGATTGATGAGGAAGAACAAACCGAGGTTCCAATTTGTCCTTCTCTCCCAAGTCTTGGATCTCCTGGAATAAGGCTCAATCTGATAGCTGTGAAGCTTCCTCATGCCAATGGGGGGAATTGGTCTAGAGATGTTGCTCGGTTGCACTTGCAACTAGCAACAGCTAAGCTTGCAATCTCTTTCAAAGGCAATTACCCTTTGTATGTGCTTCTTGTTACCAAATTCTTTCCGATACCTAATTTGTTTACCTGCAAAGATCTTGTGAGACATGAAGGGAATGTATGGCTATACAAACCAAACTTGAATGTTTTGAGAGAAAAACTTCACCTCCCAGTAGGATCTTGTGAACTTGCACTTCCTATGAGGGGAAAAGAGTTGATTTACGCGGGAAATGTTCGTAGAGAAGCATATGCAACAATTCTCCATTCAGCTCATGTGTATGTTTGTGGAGCTATTGCTGCAGCACAAAGCATTCGCATGTCTGGATCAACTCGAGACCTAGTTATACTCGTTGATGAGACAATAAGTGAGTACCACAAAAGTGGTTTAGAAGCTGCAGGGTGGAAAATTAGGACAATACAAAGGATTAGAAATCCAAAAGCTGAAAAAAATGCCTACAATGAATGGAACTACAGCAAGTTCCGTTTGTGGCAGCTAACAGATTATGACAAGATAATATTCATTGATGCAGATTTGCTCATACTAAGAAATATAGACTTCCTATTTGGAATGCCAGAAATAACTGCAACTGGAAATAATGCCACACTTTTCAACTCAGGTGTCATGGTGGTTGAGCCATCAAATTGCACATTCCGACTCCTAATGGATCATATTAATGAGTTTGAGTCCTACAATGGAGGGGACCAAGGATACTTGAATGAAATATTTACATGGTGGCATAGGATACCAAGGCACATGAACTTTTTAAAGCATTTTTGGGTTGGTGATGAGGAAGAGAAGAAACAAATGAAGACTAAGTTGTTTGGTGCTGACCCTCCAATTCTCTACGTCCTTCACTACCTAGGAATGAAGCCATGGTTGTGCTTTAGGGACTATGATTGTAACTGGAATTTTGATATCTTTCATGAGTTTGCAAGTGATGTGGCTCATGAAAAGTGGTGGAAGGTGCATGATGCGATGCCTGAGGTTTTGCAACAGTTTTGCATGTTGAAGTCAAAGCAAAAGGCACAGTTGGAATGGGATCGTAGGCAAGCTGAAATTGCAAACTATTCAAACGGGCATTGGAGATTTAAAGTTAAAGATAAGAGGTTGAAAAAATGCATAGATAATTTGTGCTCATGGAAAAATATGTTGAAGCATTGGGGAGAGACCAATTGGACTGATGATGAGTCTTATACTCCAACACCACCTGCCATTGCAACATCATCTTTTTCTGGTTTATGA 1920 0.3969 MGTSSRAGESRHRFPASIVDLYRRRLPKRNAKDVEKSIHLSIQDRSSRCKFSFLKPFVQFITICGTFLLLLYSPKVCNNHLSSSSSGPNFVNRWIWGGSDPRYTSNVDINWDDISKITEKLTRKKEVQGIGLLNFNKTELHILEQLIPNATHVVLDLEYAAKNVTWESLYPEWIDEEEQTEVPICPSLPSLGSPGIRLNLIAVKLPHANGGNWSRDVARLHLQLATAKLAISFKGNYPLYVLLVTKFFPIPNLFTCKDLVRHEGNVWLYKPNLNVLREKLHLPVGSCELALPMRGKELIYAGNVRREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISEYHKSGLEAAGWKIRTIQRIRNPKAEKNAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATGNNATLFNSGVMVVEPSNCTFRLLMDHINEFESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWVGDEEEKKQMKTKLFGADPPILYVLHYLGMKPWLCFRDYDCNWNFDIFHEFASDVAHEKWWKVHDAMPEVLQQFCMLKSKQKAQLEWDRRQAEIANYSNGHWRFKVKDKRLKKCIDNLCSWKNMLKHWGETNWTDDESYTPTPPAIATSSFSGL 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02247 639 PANTHER GLYCOGENIN SUBFAMILY MEMBER 16 616 - -
Cca09g02247 639 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 1 16 616 - -
Cca09g02247 639 Pfam Glycosyl transferase family 8 313 519 IPR002495 GO:0016757
Cca09g02247 639 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 304 554 IPR029044 -
Cca09g02247 639 SUPERFAMILY Nucleotide-diphospho-sugar transferases 307 552 IPR029044 -
Cca09g02247 639 CDD GT8_Glycogenin 307 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02247 Cca-Chr9 47682267 47687658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02247 7 639 Glycosyltransferase AT3G18660 64.209 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02247 K20890 - gmx:100783884 1204.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02247 09 47682267 47687658 Cca09g02247 09 47682267 47687658 ECH
Cca09g02247 09 47682267 47687658 Cca03g00154 03 2243176 2250950 PCT