Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00154 ATGAGAGGAACAATGGGTACTTCTCCTCATGCCGTTGAAGCTCGACACCGTTTGCCAGCATCCATTGAAGATTTATACAAACGAAGACTGCCAAGAAGCAAAGCAAAAGATGCAGAGAAGCCTTTCCACTTATCAATCCAAGATAGGAGCTCAAGATGCAAGTTATCTTTCTTAAAACTTATCCTATTGATAACCATATGTGGCACTTTTGTAACACTACTCTACTCTCCCGAGGTTTACAACACCAACCATTTATCAACCTCTGGCTCTCGGTGGATATGGGGTGGCTCGGATCCTCGTTACTTGTCCAATGTAGACACTGACTGGGATGACATATTGAAAATTACGGATAAGCTGGCAGGAAAAGATGAACTTCAAGGAATTGGGCTTGTAAATTTCAACAAGAGTGAACTAGCTCATTGGGAGAATCTTGTTCCTGATGCAACACATGTTGTTCTGCCCCTAGAATATGCTGCAAGAAATGTGACATGGGAATCCTTGTACCCTGAATGGATTGACGAGGAGGAAGAAACTGAAGTTCCTGTTTGTCCTTCTCTACCAAGTCTTAGATCCCCAGGAATAAGGCTTAACCTCATTGCTGTGAAGCTTCCTTGTAGGAATGGAGGGAATTGGTCTAGAGATGTTGCTCGTTTGCACCTGCAGCTTGCAGCTGCTGGCCTTGCAACCTCTTTCAAAGGCAACTACCCCGTTTATGTGCTTTTAGTTACCAACTGTTTTCCGATACCAAATCTGTTTACATGCAAAGAACTAGTTGGACGTGAAGGGAATGTGTGGCTATACAAACCAAACTTGAGTGTTTTGAGAGAAAAGGTCCAGCTTCCTGTAGGGTCTTGTGAACTTGCACTTCCTATGAGAGGCAAAGAGCTGGTTTACAATGGGAATGCTCCCAGAGAAGCCTATGCAACAATTCTGCATTCAGCTCATGTTTATGTTTGTGGAGCAATAGCTGCTGCACAAAGTATCCGCATGTCTGGATCAACTCGAGACCTAGTAATACTTGTTGATGAGACGATCAGCAGCTATCATAGAAGTGGTTTGGAAGCAGCAGGATGGAAGGTTAGAACCATACAAAGGATCAGAAACCCCAAAGCTGAAAAAGATGCTTACAATGAATGGAACTACAGCAAGTTCCGGCTATGGCAGTTGACAGATTATGACAAGATAATATTCATTGATGCAGATTTGCTCATTCTAAGAAACATAGATTTCCTATTTGGAATGCCAGAAATCACTGCCACAGGAAACAATGCTACTCTCTTTAACTCAGGTGTCATGGTGGTTGAGCCATCAAATTGCACATTCCAGCTCCTGATGGATCATATTAACGAGATTGAGTCCTACAATGGAGGGGACCAGGGATACCTGAATGAAATATTTACATGGTGGCACAGGATACCAAGACACATGAACTTCTTGAAGCATTTTTGGATTGGTGATGAGGAAGAGAAGAAACAAATGAAGACTATGTTATTTGGCGCGGATCCTCCAATTCTGTATGTCCTTCACTATCTAGGTGTGAAGCCATGGTTATGCTTCAGGGACTATGATTGCAACTGGAATGCTGATATCTTTCATGAGTTTGCAAGTGATGTTGCACATGCAAAGTGGTGGAAGGTGCATGATGCAATGCCTGAGCTTTTGCAGCAGTTTTGCCTGTTGAAGTCAAAGCAGAAGGCACAGTTGGAGTGGGATCGTAGGCAGGCTGAGATAGCAAACTACACCGATGGGCACTGGCGAATCAAAGTTAAAGATAGGCGCTTGAAGAAATGTATAGATAATTTGTGCAACTGGAAAAGCATGTTGCGGCACTGGGGAGAGACAAATTGGACTGATGATGAGTTCTATAATCCAACACCACCTTCCATTGTCACAGCATCCCTTTCTGCTTTATGA 1914 0.4321 MRGTMGTSPHAVEARHRLPASIEDLYKRRLPRSKAKDAEKPFHLSIQDRSSRCKLSFLKLILLITICGTFVTLLYSPEVYNTNHLSTSGSRWIWGGSDPRYLSNVDTDWDDILKITDKLAGKDELQGIGLVNFNKSELAHWENLVPDATHVVLPLEYAARNVTWESLYPEWIDEEEETEVPVCPSLPSLRSPGIRLNLIAVKLPCRNGGNWSRDVARLHLQLAAAGLATSFKGNYPVYVLLVTNCFPIPNLFTCKELVGREGNVWLYKPNLSVLREKVQLPVGSCELALPMRGKELVYNGNAPREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISSYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWIGDEEEKKQMKTMLFGADPPILYVLHYLGVKPWLCFRDYDCNWNADIFHEFASDVAHAKWWKVHDAMPELLQQFCLLKSKQKAQLEWDRRQAEIANYTDGHWRIKVKDRRLKKCIDNLCNWKSMLRHWGETNWTDDEFYNPTPPSIVTASLSAL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00154 637 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 303 552 IPR029044 -
Cca03g00154 637 SUPERFAMILY Nucleotide-diphospho-sugar transferases 304 550 IPR029044 -
Cca03g00154 637 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 1 20 614 - -
Cca03g00154 637 CDD GT8_Glycogenin 305 550 - -
Cca03g00154 637 Pfam Glycosyl transferase family 8 311 517 IPR002495 GO:0016757
Cca03g00154 637 PANTHER GLYCOGENIN SUBFAMILY MEMBER 20 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00154 Cca-Chr3 2243176 2250950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00154 13 637 Glycosyltransferase AT3G18660 66.355 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00154 K20890 - gmx:100780439 1281.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02247 09 47682267 47687658 Cca03g00154 03 2243176 2250950 PCT