Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02110 ATGGCAGGTGCAGGAGTAGGGTATGGGGACGCGAACCAGAGGATAGACTACGTGTTCAAGGTGGTGCTGATAGGGGACTCTGCGGTGGGGAAGTCGCAGATACTAGCGAGGTTCGCCAGGAACGAGTTCAGCTTGGACTCAAAGTCCACCATCGGCGTTGAATTTCAAACCAGGACTTTGCTCATAGATCACAAGACCGTTAAGGCTCAGATCTGGGACACTGCAGGCCAAGAACGATACAGAGCAGTTACAAGTGCATACTACAGGGGTGCTGTTGGGGCAATGTTGGTTTATGACATCACTAAACGCCAGACCTTTGATCACATACCTCGTTGGTTAGAAGAACTGCGAAACCATGCTGATAAGAACATAGTCATCATTCTTATAGGAAACAAATGTGATCTTGAGGACCAGCGTGATGTACCCACGGAGGATGCAAAAGAATTTGCTGAGAAAGAAGGGTTATTCTTCTTAGAGACCTCAGCACTAGAAGCAACTAATGTTGAAACAGCTTTCGTAACTGTCTTGACAGAAATATACAACATTGTCAACAAGAAGAGCCTAACTGCTAATGAAAATCAAGGAAATGGGAACTCCTCGTCTTTGTCTGGCCAGAAGATTATCGTTCCGGGCCCTGCACAGGAAGTCCCTGCCAAGAGGAATATGTGTTGTCAATCATCTTGA 684 0.4649 MAGAGVGYGDANQRIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLLIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLEDQRDVPTEDAKEFAEKEGLFFLETSALEATNVETAFVTVLTEIYNIVNKKSLTANENQGNGNSSSLSGQKIIVPGPAQEVPAKRNMCCQSS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02110 227 CDD Rab11_like 16 180 - -
Cca09g02110 227 Pfam Ras family 20 180 IPR001806 GO:0003924|GO:0005525
Cca09g02110 227 SMART arf_sub_2 4 194 - -
Cca09g02110 227 SMART ran_sub_2 24 222 - -
Cca09g02110 227 SMART rab_sub_5 19 182 - -
Cca09g02110 227 TIGRFAM small_GTP: small GTP-binding protein domain 18 175 IPR005225 GO:0005525
Cca09g02110 227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 189 IPR027417 -
Cca09g02110 227 ProSiteProfiles small GTPase Rho family profile. 12 180 - -
Cca09g02110 227 SMART ras_sub_4 16 182 - -
Cca09g02110 227 PRINTS Transforming protein P21 ras signature 19 40 - -
Cca09g02110 227 PRINTS Transforming protein P21 ras signature 42 58 - -
Cca09g02110 227 PRINTS Transforming protein P21 ras signature 60 82 - -
Cca09g02110 227 PRINTS Transforming protein P21 ras signature 122 135 - -
Cca09g02110 227 PRINTS Transforming protein P21 ras signature 157 179 - -
Cca09g02110 227 Gene3D - 11 224 IPR027417 -
Cca09g02110 227 SMART rho_sub_3 21 178 IPR001806 GO:0003924|GO:0005525
Cca09g02110 227 ProSiteProfiles small GTPase Rab1 family profile. 14 224 - -
Cca09g02110 227 PANTHER - 1 226 - -
Cca09g02110 227 ProSiteProfiles small GTPase Ras family profile. 11 209 IPR001806 GO:0003924|GO:0005525
Cca09g02110 227 PANTHER RAB GTPASE-LIKE PROTEIN A1D 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02110 Cca-Chr9 46201115 46204621 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02110 K07904 - gmx:100780896 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02110 09 46201115 46204621 Cca01g00182 01 1810024 1814397 PCT