Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00182 ATGGCTAGCGGAGGAGGTTACGGAGACGCGAACCAGAAGGTAGATTACGTGTTCAAGGTGGTGCTAATAGGCGATTCCGCGGTGGGGAAGTCGCAGATTCTTGCGCGCTTCGCCAGAAACGAGTTCAGTTTGGACTCGAAGGCCACAATCGGCGTCGAGTTCCAAACGCGCACTCTGGTAATCCAGCACAAGAGCGTCAAGGCTCAGATCTGGGACACTGCGGGCCAAGAACGATATAGAGCGGTCACAAGTGCATACTACAGGGGTGCTGTTGGGGCAATGTTGGTTTATGACATCACAAAACGTCAAAGCTTTGATCACATACCTCGTTGGTTAGAAGAACTGCGTAACCATGCTGATAAGAATATAGTTATCATTCTTATAGGAAACAAAAGTGATCTTGAGAACCAGCGTGCAGTATCCACAGAGGATGCAAAAGAATTTGCCGAGAAAGAAGGGTTATTTTTCTTAGAGACCTCAGCACTGGAAGCAACTAACGTTGAAACAGCCTTTATGACTGTTTTGACAGAAATATTCAACATTGTCAACAAAAAGAACCTAGCTGCTGATGATAATCAGGGAAATGGCAACTCAGCATCTCTGTCTGGTAAGAAGATTATTGTTCCTGGTCCTGCACAAGAAATCCCCAAGAGGAGCATGTGTTGTCAGTCCTGA 675 0.4637 MASGGGYGDANQKVDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHIPRWLEELRNHADKNIVIILIGNKSDLENQRAVSTEDAKEFAEKEGLFFLETSALEATNVETAFMTVLTEIFNIVNKKNLAADDNQGNGNSASLSGKKIIVPGPAQEIPKRSMCCQS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00182 224 PRINTS Transforming protein P21 ras signature 18 39 - -
Cca01g00182 224 PRINTS Transforming protein P21 ras signature 41 57 - -
Cca01g00182 224 PRINTS Transforming protein P21 ras signature 59 81 - -
Cca01g00182 224 PRINTS Transforming protein P21 ras signature 121 134 - -
Cca01g00182 224 PRINTS Transforming protein P21 ras signature 156 178 - -
Cca01g00182 224 ProSiteProfiles small GTPase Ras family profile. 11 221 IPR001806 GO:0003924|GO:0005525
Cca01g00182 224 PANTHER - 1 222 - -
Cca01g00182 224 ProSiteProfiles small GTPase Rho family profile. 11 182 - -
Cca01g00182 224 ProSiteProfiles small GTPase Rab1 family profile. 13 222 - -
Cca01g00182 224 Gene3D - 10 222 IPR027417 -
Cca01g00182 224 SMART rab_sub_5 18 181 - -
Cca01g00182 224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 186 IPR027417 -
Cca01g00182 224 TIGRFAM small_GTP: small GTP-binding protein domain 17 174 IPR005225 GO:0005525
Cca01g00182 224 PANTHER RAB GTPASE-LIKE PROTEIN A1D 1 222 - -
Cca01g00182 224 SMART rho_sub_3 20 177 IPR001806 GO:0003924|GO:0005525
Cca01g00182 224 SMART ran_sub_2 23 220 - -
Cca01g00182 224 Pfam Ras family 19 178 IPR001806 GO:0003924|GO:0005525
Cca01g00182 224 SMART arf_sub_2 3 185 - -
Cca01g00182 224 SMART ras_sub_4 15 181 - -
Cca01g00182 224 CDD Rab11_like 15 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00182 Cca-Chr1 1810024 1814397 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00182 K07904 - gmx:100527786 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02110 09 46201115 46204621 Cca01g00182 01 1810024 1814397 PCT