Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02109 ATGGGTGGTGGCGGGAGGGGAGGAAGATCACGCACTCAGCGGAAGCATTTCCGCCAGAGCAGAGAGAATGTGTGGAAGCGTTCCAAACCGGATCACGATCCTTCTTCCACCGAAAATCCCTCTTGGACTCCCTTCGCTACTCAGAACGACGCTTTCGATTTTTACTACAAAGAGCAGGGAATTGTACACCCGCAACAGTGGGAACAATTCGTCGCAGTTCTCAGAACTCCATTGCCCGCAACCTTCAGAATCAACTCTAGTAGCCAGTTTTCCGACGACATTCGTTCTCAATTGGAGGATGACTTCATGCATTCTCTTCGTAACGAGGTTGTTGAAGGTGGTGAGACGGAGGCTATTCGGCCGTTGCTGTGGTACCCTGGGAACTTCGCTTGGCATTCAAATTTTTCTAGGATGCAGCTCAGGAAGAACCAAACACTTGAGAGGTTCCATGAATTCCTAAAACTAGAAAATGAGATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTCTTCTTGGATGTGCATTCAAATCATTTTGTGCTTGATATGTGTGCTGCACCAGGTTCGAAAACATTCCAATTGCTTGAGATTATACACGAATCAACTAAAGCAGGATCACTACCTGATGGAATGGTTATTGCAAATGATGTTGATGTCCAAAGATGTAATCTTCTCATCCACCAAACAAAAAGAATGTGTACAGCCAATCTAATTGTTACAAATCATGAAGCACAACACTTCCCAGGATGCCGGTTAAACAGAAATTATGAAAGGACGGAGTTAGATCACAGTATTGGCCAACTGTTATTTGATCGTGTTCTTTGTGATGTCCCATGCAGTGGTGATGGTACCCTTCGTAAGGCACCTGATATGTGGAGGAAATGGAACACAGGGATGGGACAGGGTCTTCACAGCCTACAAGTTTTAATTGCTATGCGAGGTTTATCTTTACTAAAAAATGGTGGAAGAATGGTTTATTCAACATGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCTGAGGTTTTGCGGAGGTGTGGAGGATCTGTTGAACTTCTTGATGTCTCTAGTGAGCTTCCACAACTTATTCGTCGGCCAGGTCTCAAGAAATGGAAGGTATATGACAAGGGCACTTGGTTAGTCTCTTACAAAGATGTTCCTAAGTTTCGTAGAAGTGTAATTCTTCCAAGTATGTTTCCTTCTGGAAGAGGCCATCAGGATCTTGTTGATAGTAGTTGTAATGTTGACGTAGATGACATTACTAATGTTAATGGAAATGCTGGTGACGGTATTCTAGCCGTAGAGAATCCTGCTATGTCTGAGTCTTCTGTGGAAGTTTCAGATTTCCCTCTAGAGCATTGCATGAGGATAGTGCCTCATGATCAGAACACTGGAGCCTTCTTCATTGCTGTACTGCAAAAAGTTTCTCCTCTGCCAGCAATTTCAGATAAAACTAAAATAGAAATCGATGAGAAATGTGTAGAACCAACAAACCATAGTCTTAATGATGCACAAGTACCGGAGATTAATTCACCTGAAAGCACACATGAAGAAGTCTTAAAATCCGTTTCAGAGGAAAATGTAGATGACAATGAACCCAATACCGAAGATTTGGAAGTTAGTCCTGTTACATGTGACGAGCAGAATTCCAAGGAAACTCAAGAGCCCAACAATGTACCAAACATGGCAAAGAGGGTTCCAGGCAAAAGAAAGCTACAAATTCAAGGCAAATGGAGGGGTGTTGACCCTGTTGTCTTTTTCAAAGATGAAGCAATTATTAATAGTATAAGGGATTTTTATGGGATCAATGAGCATTTTCCATTCAATGGTCATCTTGTTACAAGAAACAGTGATGTAAATCATGTGAAAAGAATTTATTATATCTCCAAGTCAGTTAAGGATGTTCTTGAGTTGAACTTCAAAGTTGGGCAGCAACTTAAAATAACCTCAATTGGCCTGAAGATGTTTGAAAGACAAACAGCACGAGAAGGTAACTCTGCACCATGTGCTTTCCGGATATCATCAGAAGGATTGCCTCTTATTCTCCCATACATAACCAAACAGATTCTGCATGCATCTCCCGCAGACTTCAAGCATCTTCTGCAGAACAAAGATGTAAAATTTGAAGATTTTATTGATGCTGAGTTTGGTGAAAAAGCTGCAAACCTGATGCCAGGCTGTTGTGTGGTAATTATGAGTAAAGGGAACAGCGTTGCTACCGAGTCCCTCCAAGTGGATGAATCCACAATCGCCATTGGATGCTGGAAGGGTAGGGCGAGATTGAGTGTGATGGTTACAGCTATGGACTGCCAAGAACTACTTGAAAGGCTTTTAATACGTTTTGACACTAAAAACGGTTCCTCTGGGCATGTGGCGGCAGAAGTACAGCCTGTGCAAGAGTTAAACAGTAAAAATGACCATGATGATGGTGATGTGAAAGCTTCTGTGAATTAA 2469 0.4224 MGGGGRGGRSRTQRKHFRQSRENVWKRSKPDHDPSSTENPSWTPFATQNDAFDFYYKEQGIVHPQQWEQFVAVLRTPLPATFRINSSSQFSDDIRSQLEDDFMHSLRNEVVEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSNHFVLDMCAAPGSKTFQLLEIIHESTKAGSLPDGMVIANDVDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNRNYERTELDHSIGQLLFDRVLCDVPCSGDGTLRKAPDMWRKWNTGMGQGLHSLQVLIAMRGLSLLKNGGRMVYSTCSMNPIENEAVVAEVLRRCGGSVELLDVSSELPQLIRRPGLKKWKVYDKGTWLVSYKDVPKFRRSVILPSMFPSGRGHQDLVDSSCNVDVDDITNVNGNAGDGILAVENPAMSESSVEVSDFPLEHCMRIVPHDQNTGAFFIAVLQKVSPLPAISDKTKIEIDEKCVEPTNHSLNDAQVPEINSPESTHEEVLKSVSEENVDDNEPNTEDLEVSPVTCDEQNSKETQEPNNVPNMAKRVPGKRKLQIQGKWRGVDPVVFFKDEAIINSIRDFYGINEHFPFNGHLVTRNSDVNHVKRIYYISKSVKDVLELNFKVGQQLKITSIGLKMFERQTAREGNSAPCAFRISSEGLPLILPYITKQILHASPADFKHLLQNKDVKFEDFIDAEFGEKAANLMPGCCVVIMSKGNSVATESLQVDESTIAIGCWKGRARLSVMVTAMDCQELLERLLIRFDTKNGSSGHVAAEVQPVQELNSKNDHDDGDVKASVN 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02109 822 ProSitePatterns NOL1/NOP2/sun family signature. 274 285 IPR018314 GO:0003723|GO:0008168
Cca09g02109 822 PRINTS RNA (C5-cytosine) methyltransferase signature 185 195 IPR023267 GO:0001510
Cca09g02109 822 PRINTS RNA (C5-cytosine) methyltransferase signature 275 287 IPR023267 GO:0001510
Cca09g02109 822 PRINTS RNA (C5-cytosine) methyltransferase signature 325 341 IPR023267 GO:0001510
Cca09g02109 822 PRINTS RNA (C5-cytosine) methyltransferase signature 462 479 IPR023267 GO:0001510
Cca09g02109 822 MobiDBLite consensus disorder prediction 799 822 - -
Cca09g02109 822 MobiDBLite consensus disorder prediction 519 533 - -
Cca09g02109 822 Gene3D Vaccinia Virus protein VP39 48 400 IPR029063 -
Cca09g02109 822 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 131 152 IPR023270 GO:0016428
Cca09g02109 822 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 359 378 IPR023270 GO:0016428
Cca09g02109 822 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 651 663 IPR023270 GO:0016428
Cca09g02109 822 MobiDBLite consensus disorder prediction 17 34 - -
Cca09g02109 822 MobiDBLite consensus disorder prediction 1 45 - -
Cca09g02109 822 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 49 480 IPR029063 -
Cca09g02109 822 MobiDBLite consensus disorder prediction 806 822 - -
Cca09g02109 822 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 70 480 IPR001678 GO:0008168
Cca09g02109 822 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 5 789 IPR023267 GO:0001510
Cca09g02109 822 Pfam 16S rRNA methyltransferase RsmB/F 175 351 IPR001678 GO:0008168
Cca09g02109 822 MobiDBLite consensus disorder prediction 507 572 - -
Cca09g02109 822 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 5 789 - -
Cca09g02109 822 MobiDBLite consensus disorder prediction 542 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02109 Cca-Chr9 46192030 46199442 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02109 K15334 - gmx:100808859 1451.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02109 09 46192030 46199442 Cca01g00181 01 1800586 1808505 PCT