Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00181 ATGGGGAGAGGAAAAGGAGGGAAGAGTCGCACTCAAAGAAAGCATTTCCAGGAGAACAGGGAGAACGTGTGGAAGTCGAAACGTCCTAAATCAGATTCATATTCAGATCCTATTCCTATCAGCAACCCCTATGAAACTCAAAACCCCGCTTTCGATCACTATTACAAGGATCAGAGAATCGTGTCCTCAGAAGAATGGGATGCTTTCGTACAAGTTCTCAGAACTCCTTTGCCGGCAGCATTCAGAATCAATTCCACTAGCCGGTTTTGTGTGGATATTCGGTCCCAACTGGAGAATGATTTTATGCATTCTCTTCAGGCCGAGGTTGCGGAAGGGGATAATACGGAGGCTATTGTACCTTTGCCATGGTATCCTGAGAATCTTGCTTGGCATTCGAATTTTTCCCGTAAGCAGCTCAGGAAGAATCAAACACTTGGGAGGTTTCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATTACAAGGCAGGAAGCTGTCAGCATGGCACCTCCCCTGTTCTTGGATGTACATTCAAACCATTTTGTACTTGATATGTGTGCAGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTTTACACCAAACAACTAAAGTTGGATCTCTGCCTGACGGAATGGTTATAGCAAATGATCTAGATATCCAAAGATGCAATCTTCTCATTCACCAAACTAAACGGATGTGCACAGCCAACCTAATTGTCACCAATCATGAAGCTCAACACTTCCCAGGATGTCTTTTAAATAGAAATTGTGATAAAATGGAGCCAAATCGGCAAGACCAGCTATTATTTGATCGTGTTCTGTGTGATGTCCCATGTAGTGGTGATGGCACCCTTCGTAAGGCACCTGATCTTTGGAGGAAATGGAACACAGGTACAGGGAATGGGCTTCATAACCTACAAGTTCTAATTGCTATGCGAGGTGTATCTTTACTTAAAGTTGGTGGAAGAATGATTTATTCAACGTGCTCAATGAATCCTATTGAGAATGAAGCTGTTGTTGCAGAGGTTTTGCGGAGATGTGCAGGGTCCATTGAACTTGTAGATGTCTCTAGTCAGCTTCCCCAACTTATTCGTCGCCCAGGTCTCAAGAGATGGAAGGTATGTGACAAGGGTAAGTGGTTAGTCTCTTGCAAAGATGTTCCTAAGTCTCATAGAGGTGTAGTTCTTCCCAGCATGTTTCCAAATGGCGGAAGCTATCAGGATGTTGTTGATAGCCTTGGAGATGATATTATTACTGATGATGTTAATAGAAATTCTGAAGATGATGTTCAAGCCGCGGAGAATCCTGTGATGCATGAATTTATTGAGGAAGATTCTGATTTCCCACTAGAGCGGTGCATGAGGTTAGTGCCTCATGATCAGAATACTGGAGCCTTCTTTATTGCTGTATTACAGAAAATTTCTCCTTTGCCAGCAATTCAGATAAAACCTAGAAAAGAAGTTGGTAAACCTGTTGACACAGCAAACCCGGGCAATGAGGATGTACAAGAATTGCAGATTAATCCATTGGAAAGTATACCTGAAGAAATATCGGAGGCTAATATAAATGACAATGAACCTAATGCAGCAGATTTGAAAGTTAGTTCTGTTGCATGGGAAGAAGTGGATTTCAAGGAAGCCCAAGATCCCTGCAAAGTAGAAAACATAACAAAGAATACTCCAGGCAAAAGAAAACTACAGTTTCAGGGCAAATGGAGAGGCATTGACCCTGTGTTCTTCTTCAAAGATGAAGTAATCATTAACAGCATAAAGGCATTTTATGGTATTGATGAGCAGTTTCCAGTCAGTGGTCACCTTGTAACAAGAAACAATGATACAAGCCACGTGAAAAGAATTTACTATATCTCCAAGGCAGTCAAGGATGTTCTGGAGATGAACTTCTCAGTGGGGCAGCAACTTAAAATAACTTCTGTTGGCCTGAAGATTTTTGAAAGACAATCGTCATGTGAAGGCAGGTCTGCACCATGTGCTTTCCGGATCACTTCTGAAGGATTGCCCCTTATTCTCCCTCACATCTCCAAACAGATACTAAGTGCATCGGTTATAGACTTCAAGCATCTTCTGCAGTATAGAGCTGTAAAATTTGCAGATTTTGTGGATGCTGAGTTTGGTGAAAGGGCTACAAACCTAATGCCTGGTTGTTGTGTGGTAGTTTTGGGTGAAGGTATGCTCCACCATGATGCAATTGCAGAGAGTAAATGCCCATTAACTTGA 2241 0.4181 MGRGKGGKSRTQRKHFQENRENVWKSKRPKSDSYSDPIPISNPYETQNPAFDHYYKDQRIVSSEEWDAFVQVLRTPLPAAFRINSTSRFCVDIRSQLENDFMHSLQAEVAEGDNTEAIVPLPWYPENLAWHSNFSRKQLRKNQTLGRFHEFLKLENEIGNITRQEAVSMAPPLFLDVHSNHFVLDMCAAPGSKTFQLLEILHQTTKVGSLPDGMVIANDLDIQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCLLNRNCDKMEPNRQDQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGTGNGLHNLQVLIAMRGVSLLKVGGRMIYSTCSMNPIENEAVVAEVLRRCAGSIELVDVSSQLPQLIRRPGLKRWKVCDKGKWLVSCKDVPKSHRGVVLPSMFPNGGSYQDVVDSLGDDIITDDVNRNSEDDVQAAENPVMHEFIEEDSDFPLERCMRLVPHDQNTGAFFIAVLQKISPLPAIQIKPRKEVGKPVDTANPGNEDVQELQINPLESIPEEISEANINDNEPNAADLKVSSVAWEEVDFKEAQDPCKVENITKNTPGKRKLQFQGKWRGIDPVFFFKDEVIINSIKAFYGIDEQFPVSGHLVTRNNDTSHVKRIYYISKAVKDVLEMNFSVGQQLKITSVGLKIFERQSSCEGRSAPCAFRITSEGLPLILPHISKQILSASVIDFKHLLQYRAVKFADFVDAEFGERATNLMPGCCVVVLGEGMLHHDAIAESKCPLT 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00181 746 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 1 738 - -
Cca01g00181 746 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 69 476 IPR001678 GO:0008168
Cca01g00181 746 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 642 654 IPR023270 GO:0016428
Cca01g00181 746 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 357 376 IPR023270 GO:0016428
Cca01g00181 746 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 130 151 IPR023270 GO:0016428
Cca01g00181 746 MobiDBLite consensus disorder prediction 1 42 - -
Cca01g00181 746 Gene3D Vaccinia Virus protein VP39 45 395 IPR029063 -
Cca01g00181 746 MobiDBLite consensus disorder prediction 11 32 - -
Cca01g00181 746 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 50 476 IPR029063 -
Cca01g00181 746 ProSitePatterns NOL1/NOP2/sun family signature. 272 283 IPR018314 GO:0003723|GO:0008168
Cca01g00181 746 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 1 738 IPR023267 GO:0001510
Cca01g00181 746 Pfam 16S rRNA methyltransferase RsmB/F 174 356 IPR001678 GO:0008168
Cca01g00181 746 PRINTS RNA (C5-cytosine) methyltransferase signature 184 194 IPR023267 GO:0001510
Cca01g00181 746 PRINTS RNA (C5-cytosine) methyltransferase signature 458 475 IPR023267 GO:0001510
Cca01g00181 746 PRINTS RNA (C5-cytosine) methyltransferase signature 323 339 IPR023267 GO:0001510
Cca01g00181 746 PRINTS RNA (C5-cytosine) methyltransferase signature 273 285 IPR023267 GO:0001510
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00181 Cca-Chr1 1800586 1808505 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00181 K15334 - gmx:100808598 1306.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02109 09 46192030 46199442 Cca01g00181 01 1800586 1808505 PCT