Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02084 ATGTTCTCTCACCCGCATCTCGCTGACATGCACACAAATCCGAATTTTGGAATGAATTGCAACATTAGAGGTGGCAGATACGTTTACTCCTTTGCGATGGAGATCGTGCGCGTAGGGCAACACCTTGCCGCAAGGATGAAGTGTTTCTCTGTGTCCTGGGTTCTCCTTGCTCTCTGGTTTTTGAGTGTGTCATCTCAAAATATATCAGAGAGTGGCCTACACCAAGCTAGCTTCCCACCGAGAGGTTGGAATTCCTATGATTCCTTTTGCTGGACAATTTCTGAAGAAGAATTCTTACAAAGTGCTGAAATAGTTTCTCAACGTCTCAAGGCTCATGGATATCAGTTTGTCGTGGTGGACTATCTCTGGTATAGGAAGAAAGTCAAGGGTGCTTATCCGGATTCTCTTGGATTTGACGTGATTGATAAATGGGGAAGGATGGTCCCTGACCCAGGAAGGTGGCCTTCTTCCATAGGTGGGAAAGGGTTCAGTGAAGTAGCTAATAAAGTACATAGCATGGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACCCCTATCCTGgatacaacaaagGGAGGTGCTTATGAAGAATCTGGTCGAGTATGGCGTGCAAAAGACATAGCAATGCCAGAAAGGGCTTGTTCATGGATGCGTAACGGTTTCATGAGTGTAAATACAAAGTTGGAAGCTGGGAGAGCATTTTTGAGATCCCTTTATGAGCAATATGCTGCGTGGGGTGTTGATTTAGTGAAACATGACTGTGTGTTTGGTGATGACTTGGATTTAAATGAAATAACTTATGTATCAGAGGTTCTCAACAAGCTTAATCGCCCTATTTTGTATTCTCTGTCCCCTGGAGCCACTGTGACACCAGCAATGGCCAAGGATGTCAGTGGACTAGTCAACATGTATCGAATAACAGGAGATGACTGGGATAAATGGGCAGATGTCAGGGCTCATTTTGATGTAACAAGGGATTTTTCTACAGCTAATATGATTGGAGGAAAAGGTTTAAAGGGGAATTCGTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGGTTCAAATGAAGGTCCACACAGGTATAGTAACCTCAATCTAGAAGAGCAAAGGACACAGATGACTTTGTGGTCTTTGGCGAAGTCTCCCCTTATGTATGGGGGGGATGTGCGGAAGATTGATCCTACCACATATGAACTTATCACAAATCCTACCCTGCTAGAGATTAATTACTTCAGCTCAAATAATATGGAGGCATGGAAAAAAAGAAGACCCAAGAAAGGAATAAAAGCATCGTACACACAGTCATTAGGTCTGACTCGCTGTTCTGAATCAAAGGCAAGCGGTTGGTCTATTGAAAGTCTTAACCAAGAGCTTGAAAGAATCTGTTGGAAAAGGAGTTTAGAAAACAAGCATCAGGCCCCCTTCTGCGTACACAAAAGAGAACTTCAGTTCAGATTAGACGGGGAGAGTATGTATCAAGAGGACTATCGAGGAAAACATCAATTAGTTGCAACCGACAAAATGAATTTTTGCTTGAATGGTTCTCCAAAACATAAGGTTACTTCTAATGAGTTCAAGAGAGGTACCTTTTCACCTTGCGGATGGGATTCAAATCAGATATGGGAACTGAACTCCAATGGGACCCTGGTAAATAGTTACTCCGGTCTTTGTGCAACAGTAGAGTATGTTGAAGCTAATGCTAATTCTGGTGGGGTTCGCTCTTGGATTGCAACAGGAAGAAAAGGGGAAATTTATCTTGCTTTCTTCAATCTAAGCGAGCAAAAGACGGTGATATATGCGAAGACATCATATCTGGCTAAGGTTCTTCCTGACAGAACCATCGATTCATGCAAGGGCAAGGAAGTGTGGAGTGGAAAGGAAGTATTAACAACGCATGGGACGATATCAATGAACGTGGGAATCCATGGATGTGCATTATTTGTTCTATATTGCCACTAG 2004 0.4281 MFSHPHLADMHTNPNFGMNCNIRGGRYVYSFAMEIVRVGQHLAARMKCFSVSWVLLALWFLSVSSQNISESGLHQASFPPRGWNSYDSFCWTISEEEFLQSAEIVSQRLKAHGYQFVVVDYLWYRKKVKGAYPDSLGFDVIDKWGRMVPDPGRWPSSIGGKGFSEVANKVHSMGLKFGIHVMRGISTQAVNANTPILDTTKGGAYEESGRVWRAKDIAMPERACSWMRNGFMSVNTKLEAGRAFLRSLYEQYAAWGVDLVKHDCVFGDDLDLNEITYVSEVLNKLNRPILYSLSPGATVTPAMAKDVSGLVNMYRITGDDWDKWADVRAHFDVTRDFSTANMIGGKGLKGNSWPDLDMLPFGWLTDPGSNEGPHRYSNLNLEEQRTQMTLWSLAKSPLMYGGDVRKIDPTTYELITNPTLLEINYFSSNNMEAWKKRRPKKGIKASYTQSLGLTRCSESKASGWSIESLNQELERICWKRSLENKHQAPFCVHKRELQFRLDGESMYQEDYRGKHQLVATDKMNFCLNGSPKHKVTSNEFKRGTFSPCGWDSNQIWELNSNGTLVNSYSGLCATVEYVEANANSGGVRSWIATGRKGEIYLAFFNLSEQKTVIYAKTSYLAKVLPDRTIDSCKGKEVWSGKEVLTTHGTISMNVGIHGCALFVLYCH 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02084 667 Pfam Alpha galactosidase C-terminal beta sandwich domain 585 664 IPR041233 -
Cca09g02084 667 Gene3D - 580 666 IPR013780 -
Cca09g02084 667 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 49 664 IPR002241 GO:0004553|GO:0005975
Cca09g02084 667 Pfam Alpha galactosidase A 250 424 IPR002241 GO:0004553|GO:0005975
Cca09g02084 667 Pfam Alpha galactosidase A 92 187 IPR002241 GO:0004553|GO:0005975
Cca09g02084 667 SUPERFAMILY Ricin B-like lectins 516 593 IPR035992 -
Cca09g02084 667 SUPERFAMILY Glycosyl hydrolase domain 583 665 - -
Cca09g02084 667 CDD GH27 79 424 IPR002241 GO:0004553|GO:0005975
Cca09g02084 667 PRINTS Glycosyl hydrolase family 27 signature 73 92 IPR002241 GO:0004553|GO:0005975
Cca09g02084 667 PRINTS Glycosyl hydrolase family 27 signature 382 403 IPR002241 GO:0004553|GO:0005975
Cca09g02084 667 PRINTS Glycosyl hydrolase family 27 signature 167 188 IPR002241 GO:0004553|GO:0005975
Cca09g02084 667 PANTHER ALPHA-GALACTOSIDASE 49 664 - -
Cca09g02084 667 SUPERFAMILY (Trans)glycosidases 75 424 IPR017853 -
Cca09g02084 667 Gene3D Aldolase class I 70 427 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02084 Cca-Chr9 45873969 45879977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g02084 52 496 Glycoside Hydrolase AT3G26380 67.102 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02084 - - gmx:100783705 1144.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02084 09 45873969 45879977 Cca01g00160 01 1564985 1571350 PCT