Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00160 ATGGAGATTTTTGTTAGTGTATACACTGCGTTTAACTCTGTGGAAACAGCTAAAGCAATGATGAAGTGTTTCCTCTTATCATTCTTCTCTCTTTGCTTTCTCCTCTGTCTCTGCTTTGAAAGCGTGTCCTCTCAAAATGTGTCGAGGAGTGACCAACAGCAAGCTACCCTCCCACCAAGAGGTTGGAACTCCTATGATTCCTTTTGCTGGACAATATCTGAAGAAGAATTCTTACAAAGTGCTGAAATAGTTTCACAGCGTCTCTATGATCATGGATATGAGTATGTTGTGGTGGATTACCTTTGGTATAGAAGGAAAGTCGAGGGTGCTCATCATGATTCTTTTGGGTTTGACGTGATTGATGACTGGGGGAGGATGCTTCCTGACCCAGGAAGATGGCCTTCTTCCAAAAATGGGAAAGGATTCACTGAAGTAGCTAATCAAGTACATAGCATGGGTTTAAAATTTGGGATTCATGTCATGAGAGGGATAAGCACACAAGCTCTCCACGCAAACACCCCTATCCTTGATACAACAACGGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGTATGCAAAAGACATAGCAATCCCAGAAAGAGCTTGTGCATGGATGTCTCATGGTTTCATGAGCGTAAATACCAAATTGGGTGCTGGGAAAGCTTTTTTGAGATCCCTTTATGAGCAGTATGCTTCATGGAATGTTGATTTTGTGAAACATGACTGTGTATTTGGGACGGACTTTGATTTAAATGAAATAAGCTATGTGTCTGAGGTTCTCAAGGAGTTTGATCGCCCCATTGTATATTCTTTGTCTCCTGGAACCAGCGTGACACCAGCCATGGCCAAGGATGTCAGTGGACTGGTCAATATGTATCGTATAACAGGAGATGACTGGGATACATGGAGGGATGTCAAAGCTCATTTTGATATAACTAGGGATTTTTCAAATGCTAATATGATAGGAGCAAAAGGTTTATTGGGGAACTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCTGGTTCAAATGAAGGTCCACATAGGTATAGTAACCTCAATCTAGAAGAGAAGAAGACACAGATGACTCTGTGGTCTATGGCAAAGTCTCCCCTTATGTATGGAGGGGATGTTCGGAAGATTGATCCTAGCACATATGATGTTATCACAAATCCTACCCTGCTGGAGATTAATTCTTTTAGCTCAAATAATATGGAGTTTCCTTATATCACAAAAGTGATTAGTGAAGATCAGGATCTTGATGGGCAAATGAGAAGAAGCAGCAAAGAAATGAAAACAACCTACACTCATTCAATAGGCCTCACAAGCTGCACTGAGTCAAAGGCAAGTGGTTGGGCTAGTGAAAGTCTTAACCAATATCTTGAAAGAATATGTTGGAAAAGAAGTTTAGAAAACAAGCATCTTGCCCCCTTCTGTGTGCACAAGAGAGAACTTTACTTCCCATTAGATGAAGTGACTATGTATGAAGAGTATCACCAAGGGAAATATCATTTAGTTGCAACCAACAGAATAAAATTTTGCTTGGATGCTTCTCCAAAACGCAAGCTTACTTCTGAAGAGTTTGAGAGAGGGACATTTTCTCCCTGCAGGTGGGATTCAAATCAGATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGTTATTCTGGCTTGTGTGCAACAGTAGAGTATAGCGAAGATACTAGTAATTCTGATGGATTGCGCTCTTGGATTGCTACAGGAAGAAAAGGAGAAGTCTATGTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGTGATATCTGCGCAGACATCGGACCTGGCTAAGTTTCTTCCAGACAGAAACTTCGGTTCTTGTCAGGGTAGTGAAGTGTGGAGTGGAGATGCTATAGAAATAACTCAGGGGACGTTCTCAACAGCAGTGGAAATACATGGAACTGCACTAATTGTTCTGGATTGTAACTAG 1983 0.4181 MEIFVSVYTAFNSVETAKAMMKCFLLSFFSLCFLLCLCFESVSSQNVSRSDQQQATLPPRGWNSYDSFCWTISEEEFLQSAEIVSQRLYDHGYEYVVVDYLWYRRKVEGAHHDSFGFDVIDDWGRMLPDPGRWPSSKNGKGFTEVANQVHSMGLKFGIHVMRGISTQALHANTPILDTTTGGAYQESGRVWYAKDIAIPERACAWMSHGFMSVNTKLGAGKAFLRSLYEQYASWNVDFVKHDCVFGTDFDLNEISYVSEVLKEFDRPIVYSLSPGTSVTPAMAKDVSGLVNMYRITGDDWDTWRDVKAHFDITRDFSNANMIGAKGLLGNSWPDLDMLPFGWLTDPGSNEGPHRYSNLNLEEKKTQMTLWSMAKSPLMYGGDVRKIDPSTYDVITNPTLLEINSFSSNNMEFPYITKVISEDQDLDGQMRRSSKEMKTTYTHSIGLTSCTESKASGWASESLNQYLERICWKRSLENKHLAPFCVHKRELYFPLDEVTMYEEYHQGKYHLVATNRIKFCLDASPKRKLTSEEFERGTFSPCRWDSNQMWELNPNGTLVNSYSGLCATVEYSEDTSNSDGLRSWIATGRKGEVYVAFFNLSEQKTVISAQTSDLAKFLPDRNFGSCQGSEVWSGDAIEITQGTFSTAVEIHGTALIVLDCN 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00160 660 Pfam Alpha galactosidase A 228 403 IPR002241 GO:0004553|GO:0005975
Cca01g00160 660 Pfam Alpha galactosidase A 71 167 IPR002241 GO:0004553|GO:0005975
Cca01g00160 660 CDD GH27 58 403 IPR002241 GO:0004553|GO:0005975
Cca01g00160 660 Gene3D Aldolase class I 36 405 IPR013785 -
Cca01g00160 660 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 23 657 IPR002241 GO:0004553|GO:0005975
Cca01g00160 660 SUPERFAMILY (Trans)glycosidases 54 403 IPR017853 -
Cca01g00160 660 PRINTS Glycosyl hydrolase family 27 signature 52 71 IPR002241 GO:0004553|GO:0005975
Cca01g00160 660 PRINTS Glycosyl hydrolase family 27 signature 146 167 IPR002241 GO:0004553|GO:0005975
Cca01g00160 660 PRINTS Glycosyl hydrolase family 27 signature 361 382 IPR002241 GO:0004553|GO:0005975
Cca01g00160 660 SUPERFAMILY Ricin B-like lectins 517 583 IPR035992 -
Cca01g00160 660 Gene3D - 572 659 IPR013780 -
Cca01g00160 660 CDD RICIN 507 568 IPR000772 -
Cca01g00160 660 PANTHER ALPHA-GALACTOSIDASE 23 657 - -
Cca01g00160 660 Pfam Alpha galactosidase C-terminal beta sandwich domain 578 657 IPR041233 -
Cca01g00160 660 SUPERFAMILY Glycosyl hydrolase domain 576 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00160 Cca-Chr1 1564985 1571350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00160 30 489 Glycoside Hydrolase AT3G26380 68.113 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00160 - - gmx:100777954 1196.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00160 01 1564985 1571350 Cca01g00160 01 1564985 1571350 ECH
Cca09g02084 09 45873969 45879977 Cca01g00160 01 1564985 1571350 PCT