Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02077 ATGAGTTTCCCAGAATTTGTAATTTGCACAATTTTATCGCGGGTCAAAGTTCTGGAGACTTGGACTGCTTTGGTGGTTTTGTTTCTCCTTGTGTTGATTCTGAAGGAGTCGATCATGGGAGGTAAGAGTTCAAAAGGGTCTGATAGGAGGCATGTTTCATCGTATGGATCTGCTGGTTCTTCATCTTCATGGGATAACTATGAATACCCTCGGTCATCACAAGCATACCCACAACAAAATCCATATAACACACCTCTTCACCACCCTGCAACGGCTCCATTCCACGATTATTCACGGCCAAAAAGGAGGTTGGATAGGAGATATTCCAGAATAGCTGATGATTACCATTCACTGGATGAGGTTACCACTGCTCTTTCACATGCTGGCCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTTACAAAGAGCAACGAGTGGACAGGGAAGAGGTCATTCAACCGAAAAAGTTTACATCATATAGGAAGCGATCATAATCCTTATGAACAAGCAATCTCAATTATTGGGAAAACTATAAGTGCTTTTGACGAGGACAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTTAGTTTCCATTCTGATGAAAGGTTCTGCAATGGATTTGAGGAAGTTTTATTAAGATATAGAGATATTGTTCCTAGCCTGCGTCTGGCAGGACCCACTTCATTTGCCCCTATTATTGAGATGGCCATGACTATAGTTGAGCAAAGTGGCGGCCAGTATCATGTCTTGCTAATAATTGCTGATGGACAGGTGACTAGGAGCGTTGACACAGAACATGGCCAGTTAAGTCCACAGGAAAAGAAGACAATTGATGCAATTGTAAAAGCCAGCGAGTATCCACTTTCAATAGTTTTGGTCGGGGTTGGAGATGGACCGTGGGATATGATGAGGGAATTTGATGATAACATTCCAGCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTCACCGAAATTATGTCAAGGAGTATACATTCAAGCAGAAAGGAGACAGAGTTTGCTCTAGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCTTGGCATATTGGGTGCACGGAATGGACATTCACCAGACAGGGTTCCTCTACCTCCACCTCATTATGAGAGGGCTTCTGCTAGCAGCAGCACAACATCTTTTCGTTCAAACAGTTTTCAGCAGAGTACACGTACATATTCTGTCAACGATGATGTTAACGCAGAATCATCTTCAATTGGCTTATATGATAACAAGATTTGTCCTATTTGTCTTACTAATGGGAAGGATATGGCCTTTGGTTGCGGGCATCAGACTTGTTGCGACTGTGGAGAAACCCTCGAATCATGTCCCATTTGCCGAAGCACAATCAATACCAGAATAAAGCTTTACTAG 1431 0.4193 MSFPEFVICTILSRVKVLETWTALVVLFLLVLILKESIMGGKSSKGSDRRHVSSYGSAGSSSSWDNYEYPRSSQAYPQQNPYNTPLHHPATAPFHDYSRPKRRLDRRYSRIADDYHSLDEVTTALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSDHNPYEQAISIIGKTISAFDEDNLIPCFGFGDASTHDQDVFSFHSDERFCNGFEEVLLRYRDIVPSLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTEHGQLSPQEKKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSRSIHSSRKETEFALAALMEIPSQYKATIDLGILGARNGHSPDRVPLPPPHYERASASSSTTSFRSNSFQQSTRTYSVNDDVNAESSSIGLYDNKICPICLTNGKDMAFGCGHQTCCDCGETLESCPICRSTINTRIKLY 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02077 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 476 IPR013083 -
Cca09g02077 476 MobiDBLite consensus disorder prediction 41 97 - -
Cca09g02077 476 SUPERFAMILY RING/U-box 424 472 - -
Cca09g02077 476 Pfam Zinc finger, C3HC4 type (RING finger) 430 470 - -
Cca09g02077 476 ProSiteProfiles Zinc finger RING-type profile. 433 466 IPR001841 -
Cca09g02077 476 PANTHER RING-FINGER PROTEIN 39 476 - -
Cca09g02077 476 SMART VWA_4 132 335 IPR002035 -
Cca09g02077 476 Pfam Copine 157 370 IPR010734 -
Cca09g02077 476 SUPERFAMILY vWA-like 134 316 IPR036465 -
Cca09g02077 476 MobiDBLite consensus disorder prediction 50 86 - -
Cca09g02077 476 PANTHER COPINE FAMILY PROTEIN 1 39 476 - -
Cca09g02077 476 CDD RING-HC_RGLG_plant 433 476 IPR045317 GO:0061630|GO:0070534
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02077 Cca-Chr9 45830210 45835219 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02077 K16280 - gmx:100800161 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02077 09 45830210 45835219 Cca01g00156 01 1527587 1531960 PCT