Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00156 ATGTCCCTAGAGATAGAGACTTGGACAGTTTTGGTTGCCATTCTGTGCATCTTGGTCTTTATTCTGAAGGAGATTGTTATGGGAGGGAAGAGTTCAAAAGGGAGTGGTAGGAGGTATGAGTATGATTATGGTGCTTCTTCATCTTCATGGAATAACCATGGTGGATACCCTTCATCGTACCAAACACCTcagcaccagcatgcaccagcaccaccatcagctccaTTTCATGACTATGCACAGCCAAAAAGGAAGTTGGATAGGAAATATTCCAGGATAGCTGATAATTACCGTTCTCTGGATGAGGTTACTGCTGCACTTGCTAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATGACATTGGAAGTGGGCAAAACCCTTATGAACAAGCAATTTCTATTATTGGGAAAACGTTATCTGCTTTCGATGAAGATAACATGATTCCTTGTTTTGGATTTGGAGATGCATCTACACATGATCAAGATGTATTTAGTTTCTATTCAGAAGAGAGGTTCTGCAATGGGTTTGAGGAAGTTTTGTCGCGATACAGACAAATTATTCCTTACCTCAAACTAGCAGGACCCACTTCGTTTGCTCCTGTTATTGAAATGGCTATGACTATTGTTGAACAAACTGGTGGCCAATATCATGTCTTGCTAATAATTGCAGATGGACAGGTGACTAGAAGCATTGACACACAGCGTGGCTACTTTAGTCCACAGGAGCAGAAGACAGTAGATGCAATTGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATCCCTTCTCGGGCATTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAATGGCAAGGAATGTCGATTCAATGAGAAAAGAGACTGAATTTGCCCTTGGAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATTGAGCTTGGAATATTGGGTGCACGGAGGGGACATTCACCAAATAGGGTTGCTCTACCCCCACCTCTTTATAATAGGACTTCTTCCAGCATTAGCACAAAATCTTCAGGGTCAAACAGTTTTCAGCAGAGGGCACCTACACATACTGGCTATAACAGTGGCGTTCACACAGAGCCATCTACAAGTTCTTTATATGATAATAAGGTATGCCCCATTTGTCTTACCAATGGAAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGTGAGTGTGGAGAAGACCTCCAATTCTGTCCTATTTGCCGGAGCACAATCCATACTAAAATAAAGCTTTACTAG 1380 0.4022 MSLEIETWTVLVAILCILVFILKEIVMGGKSSKGSGRRYEYDYGASSSSWNNHGGYPSSYQTPQHQHAPAPPSAPFHDYAQPKRKLDRKYSRIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIGSGQNPYEQAISIIGKTLSAFDEDNMIPCFGFGDASTHDQDVFSFYSEERFCNGFEEVLSRYRQIIPYLKLAGPTSFAPVIEMAMTIVEQTGGQYHVLLIIADGQVTRSIDTQRGYFSPQEQKTVDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTEIMARNVDSMRKETEFALGALMEIPSQYKATIELGILGARRGHSPNRVALPPPLYNRTSSSISTKSSGSNSFQQRAPTHTGYNSGVHTEPSTSSLYDNKVCPICLTNGKDMAFGCGHQTCCECGEDLQFCPICRSTIHTKIKLY 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00156 459 PANTHER COPINE FAMILY PROTEIN 1 27 459 - -
Cca01g00156 459 SUPERFAMILY RING/U-box 409 455 - -
Cca01g00156 459 PANTHER RING-FINGER PROTEIN 27 459 - -
Cca01g00156 459 MobiDBLite consensus disorder prediction 54 79 - -
Cca01g00156 459 SMART VWA_4 114 317 IPR002035 -
Cca01g00156 459 ProSiteProfiles Zinc finger RING-type profile. 416 449 IPR001841 -
Cca01g00156 459 MobiDBLite consensus disorder prediction 360 407 - -
Cca01g00156 459 SUPERFAMILY vWA-like 115 298 IPR036465 -
Cca01g00156 459 MobiDBLite consensus disorder prediction 368 407 - -
Cca01g00156 459 CDD RING-HC_RGLG_plant 415 459 IPR045317 GO:0061630|GO:0070534
Cca01g00156 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 459 IPR013083 -
Cca01g00156 459 Pfam Zinc finger, C3HC4 type (RING finger) 413 453 - -
Cca01g00156 459 Pfam Copine 139 352 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00156 Cca-Chr1 1527587 1531960 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00156 K16280 - gmx:100798816 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00156 01 1527587 1531960 Cca01g00156 01 1527587 1531960 ECH
Cca09g02077 09 45830210 45835219 Cca01g00156 01 1527587 1531960 PCT