Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02072 ATGGCAATGATCCCTCGAAAGATGCAATCTAGGGCTAGTCGCCATATTTTTTCATCATCCAATGATACTACATTGACCAAACATATATGTGCCACTCATGCTCCTGTTGATGGTCTCATTCATATTAGACCTCTTCTCAATGTTGTTCAAGACATTTTTCATTGTGCTGCCTCTCTCACCCATCCCATTGTTGAGGCATATGGACAACAAGGGAAAATGAGTTTCATGAAGGACAATATCCACCAATCTGATGTAGCTGACCTACAAGATATATTGTACCACACAATCAACAAACTTTCTTGCGAGATATGTTGCAAGTGTTCATATGGAGAAGATGTACATGCCACAACCATGGGAATACTAGGCATGCTCTCAAGTTATTCATGGGATGCAAAGGTGGTGATAGCATTAGCATCATTTGCAACCAACTTTGGGTTGTTTTGGTTGGTGGCTCAACTTTATACCACCAACCGTCTTGCTAAGTCTGTTGCAATGTTGAAGCACATCCATCAAACACTGGAACAAAGGGAGGATTTAGGATTGAAGTTCGAAACAATCAACAACCTTCTCAAGGCAACGTTGGATGCAACCAATTACATAGTCCAATTTCATGAGCTTCCCTCTCAATATATTGACCCTGAGGCACCAGAGATGTTTATTGCCTCTACTCTTATTCCTAGTGCTGTCTATTGGACCATTCGAAGTATTGTGGCTTGTGCATCGCATATTTTAGGCATAACTGGCTTGGGTCAAGGATACGTTATATCAACATTAGAATCTTGGGAGCTTTCTAGTTTGGCCCATAAGCTTGATAACATAAATAGCCACCTTCGAAAGCAACTCGTCATTTGTCAACAACTTTTAGATGAGAATAAACAGAGAGAAGTATTTGATTCACTTTGGATCCTTTTTGAGACACCCCACCAAGATAATTTTAAAGTTCTCAAAGCTTTGATTTCCAGCAAGGATGATCCATTACCACTTCTTGATGGTTCTTCCAAACAAAGGGTTAGCATTGAGGTATTGAGGAAGAAAATGGTGTTACTCTACATAACAGACCTACATAATGTCTCTGAACAAGAGATTGTGATTTTTGAACAAATGTACCTAGAGTCACGTGAGGATTCATTCAGGGTAGAGAGTCAATACGAATTGGTTTGGATTCCAATTGTGGACAAGGCAATCCCATGGTCTGAAGTGAAACCAAAGTTTAAAAAACTACAATCAATGATTTCGTGGTACTCACTTTTTGACCCTTCTCTTATGGAGTCTGCAACCATTAGGTACATTAAGGAGGTATGGCATTTCAACACGAAGCCAATCCTCGTAGTGTTGGATCCACAAGGGAAGGTAGTGAATCTTAATGCAATACCCATGATGTGGATTTGGGGAAGCTTAGCATATCCTTTCTCGAGCTCAAAGGAAGAAGCACTATGGAATGAGGAAACATGGGGGCTTGCACTATTGGCTGATACAATTGATCAGTCACTTTTGGATTGGATGTCGGAAGGCAAATATATATGCTTGTATGGAGGGGGTGACATGGAGTGGATCCGCCAATTCACAAGCACTGCACATTCATTGGCGAAAGCTCTGCAACTACCACTAGAGATGATTTATGTGGGGAAAAGTAATCCAGGGAAAAAAGTTCAAGAACTCAACAATAACATACAAAAAGAAAATCTGAGCAACGTACTTCCAGACCTCGCCATAATTTGGTTCTTTTGGGTTAGGCTAGAGAGCATGTGGCAATCCAAATCACAGCAGAATAAAACAGTAGAGAACGACCATATAATGCATGAAGTTATGAGAATCCTAACCTACGACAGTGGTGACCCGGGATGGGTCGTAATGAGTCAAGGTACAGGAAAAATGATACAGGGCATGGGAGATGCATTTTTAAGGTGCTTGTATGATTATGAACAGTGGAAGGACAAGGCACAAGATAAAGGACTTTTACCAACAATGGATGATTATATAAAAGAAATCCAAATCCCACACCACTGCAATCGCTTGATACTACCAGGAACTAGTGGCGGAATACCAGACACAGTGACCTGCGCTGAATGTGGCAGAAAAATGGAAAAGTTCTACATGTATCGTTGTTGCAACGAGTGA 2118 0.4084 MAMIPRKMQSRASRHIFSSSNDTTLTKHICATHAPVDGLIHIRPLLNVVQDIFHCAASLTHPIVEAYGQQGKMSFMKDNIHQSDVADLQDILYHTINKLSCEICCKCSYGEDVHATTMGILGMLSSYSWDAKVVIALASFATNFGLFWLVAQLYTTNRLAKSVAMLKHIHQTLEQREDLGLKFETINNLLKATLDATNYIVQFHELPSQYIDPEAPEMFIASTLIPSAVYWTIRSIVACASHILGITGLGQGYVISTLESWELSSLAHKLDNINSHLRKQLVICQQLLDENKQREVFDSLWILFETPHQDNFKVLKALISSKDDPLPLLDGSSKQRVSIEVLRKKMVLLYITDLHNVSEQEIVIFEQMYLESREDSFRVESQYELVWIPIVDKAIPWSEVKPKFKKLQSMISWYSLFDPSLMESATIRYIKEVWHFNTKPILVVLDPQGKVVNLNAIPMMWIWGSLAYPFSSSKEEALWNEETWGLALLADTIDQSLLDWMSEGKYICLYGGGDMEWIRQFTSTAHSLAKALQLPLEMIYVGKSNPGKKVQELNNNIQKENLSNVLPDLAIIWFFWVRLESMWQSKSQQNKTVENDHIMHEVMRILTYDSGDPGWVVMSQGTGKMIQGMGDAFLRCLYDYEQWKDKAQDKGLLPTMDDYIKEIQIPHHCNRLILPGTSGGIPDTVTCAECGRKMEKFYMYRCCNE 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02072 705 PANTHER SIEVE ELEMENT OCCLUSION-RELATED 1 705 - -
Cca09g02072 705 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 1 705 IPR039299 GO:0010088
Cca09g02072 705 Pfam Sieve element occlusion N-terminus 20 308 IPR027942 -
Cca09g02072 705 Pfam Sieve element occlusion C-terminus 473 704 IPR027944 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02072 Cca-Chr9 45791662 45795512 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02072 - - gmx:100799626 1180.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02072 09 45791662 45795512 Cca09g02072 09 45791662 45795512 ECH
Cca09g02072 09 45791662 45795512 Cca01g00153 01 1500522 1508448 PCT