Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00153 ATGCAAAATGATATTCTTATAAAGAAGCTCCTCCTCACACACGATCCAGATGGTCGCAGGCTGGATTCTGAAACCATGCTTCTTGCTGTTGGCAACATTATGTTTCATGCTTCCTCAATAATAGTGGCTTCTAATTTATATTCTGCTTCCTTTCAGAAGAATGACATAACTGAAATAGAAACGCTTGGTTGTAGTGAACCAGTAGGATTCGTCATCACAAAAATAGGCAAGATTCTATGCAAATGCTATGGTGAAGGTGATATTAACTCAAGGATCACGAGTGTGTTTGATTTGATAGGGGAGTATAGTTGGGATGCAAAAGTAGTTCTAGTGCTTGCTGCTTTTGCTGTGAGATATGGTGAATTCTGGCAACTTATGCAGCTATATCGTGGTAATACTTTGGCAGCTTTAATTTCAAGTATTAAGCTGCTACCATGCAACTTAAAGCCACTGAAGCTACAAATCAAAGCATTGAGCTTGTTGGTTAAGATTATGATGGATGTGGCTATGTATATCATTAAGTTTGAAAACTTGCCCCTTCAACATGTAGAGCTCGGAAATGATGTACTCATTGTCACAAAGTCTCAAATATACGAAGCTGCATACTGGATCACCAGAAGCTGTTTAGCATGTTTTTCTCAAGTCACCGATTTCACAACCAAGAAACATGAGCAAGAATGCCATTTTGATGTATTCGGTCATTTCAGGTATTCTGATTCAACAATAATTGCTGCTTGGGAGCTTTCAAGTTTGGCGTATAGATTAAGTAACATATGCAGCAATCTCAGAAGACAGGTGGATCAGTGTCACCAAGAAATAGAGAAAAACTTGTATGAGAAGCTGTTGAACCTTGCTCGTGAGGAGCACATTGATAATCAGAAGATTCTCACTTTATTTTTTTCTTCCAAGAATTACTTGCCATTGAAGGATTGCTCGACAGAAGTAAAGGTTGGTGTGTCTGAACTGAAAAATAATATAGTTCTGTTGTTGATCTCAAAACCGCAACTGCTCAATCCGGTAGAAATATTCTTACTGTTCCAGCAAACACGTGATCATCCTCTGAATGAGAGGTTGAGGGAGAGTTATAAGATTGTGTGGATTCCCCTTCCATCTTCTGATACATGGACTGAGGCTGAAGAGAGTAGCTTTAATTTTCTGTCAGATTCCTTGCCTTGGCATGCTGTTCGGAAACCAATGTTACTTACCACAGCAGTGGTGAAGTACATAAGGGAACAATGGAACTATAAGGATGAGCCAATCATGGTAGCTCTAGATTCAAAAGGGAAGATCACAAACTACAATGCTCTTGATATGATCAAGATTTGGGGAGCCAAAGCTTATCCATTTTCATCTTCAAAAGAGAAAGAGCTGTGGCAAGATCAGAATTTGACAATGCAACTTTTGCTGGGTGATATCAATCCTCTCCTTGCTTATTGGGTTGAACAAGGCAAAAATATATGCCTTTATGGGAGTGAAAACTTGGTTTGGATCCAACAATTCAATGATAAGATAACTGAGCTCAAACGAGCAGGCCTGCAGATGGAAACAATATATGTTGGTAATCGTCAAATAGGTGAACATGTTAAGCAAATAATTGCAAGAAGTGGTGAAATAAATCTGAGTGATCCACTTTCCTTCTCAAGTGTACAATTCTTTTGGCTTCGGTTGGAGAGTATGAGAAGGTCTAAACTCAGACTAGGGAAGACACCAAGTTCTGATTATGTACTAGCTGAGTTGTCAGCCTTGCTTGACATGGATGACGGAGAGGAAGGTTGGACAGTGATTGGAAGAGGGGGTTCAACTGATGTTATCAGGCTTCAAGGGATGCAGCAGGTGATGGAATTCTTGAGAGAAAATATAGTCAACTTGAGATTTTCTTGTGCTCCAAGAAACTTCCAACTAGACCCTGATTTTGTTGTAGGGAGTTGCACTCACTCTTACTTTGTTCCCTCAAGAGAAAATGAAAGACTAAGTCAAGGAACTGTAATTTGTCAAGAGTGCAAGCGTCCCATGAAGAAGTTCGTGGTGTACCAGCCATGA 2040 0.3975 MQNDILIKKLLLTHDPDGRRLDSETMLLAVGNIMFHASSIIVASNLYSASFQKNDITEIETLGCSEPVGFVITKIGKILCKCYGEGDINSRITSVFDLIGEYSWDAKVVLVLAAFAVRYGEFWQLMQLYRGNTLAALISSIKLLPCNLKPLKLQIKALSLLVKIMMDVAMYIIKFENLPLQHVELGNDVLIVTKSQIYEAAYWITRSCLACFSQVTDFTTKKHEQECHFDVFGHFRYSDSTIIAAWELSSLAYRLSNICSNLRRQVDQCHQEIEKNLYEKLLNLAREEHIDNQKILTLFFSSKNYLPLKDCSTEVKVGVSELKNNIVLLLISKPQLLNPVEIFLLFQQTRDHPLNERLRESYKIVWIPLPSSDTWTEAEESSFNFLSDSLPWHAVRKPMLLTTAVVKYIREQWNYKDEPIMVALDSKGKITNYNALDMIKIWGAKAYPFSSSKEKELWQDQNLTMQLLLGDINPLLAYWVEQGKNICLYGSENLVWIQQFNDKITELKRAGLQMETIYVGNRQIGEHVKQIIARSGEINLSDPLSFSSVQFFWLRLESMRRSKLRLGKTPSSDYVLAELSALLDMDDGEEGWTVIGRGGSTDVIRLQGMQQVMEFLRENIVNLRFSCAPRNFQLDPDFVVGSCTHSYFVPSRENERLSQGTVICQECKRPMKKFVVYQP 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00153 679 Pfam Sieve element occlusion N-terminus 2 289 IPR027942 -
Cca01g00153 679 Pfam Sieve element occlusion C-terminus 452 678 IPR027944 -
Cca01g00153 679 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 2 678 IPR039299 GO:0010088
Cca01g00153 679 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION C 2 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00153 Cca-Chr1 1500522 1508448 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00153 - - gmx:100819823 1092.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00153 01 1500522 1508448 Cca01g00153 01 1500522 1508448 ECH
Cca09g02072 09 45791662 45795512 Cca01g00153 01 1500522 1508448 PCT