Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02066 ATGGCAGCGACAATATCAGCCATGGCTACAATCAACGCAAAGTGCCTCAACACCAAGCTCCCTAACCCTAACCCTAACCCTAAGCTCATACCATCAAAACCCACCACCCTCCCACTCCCAAAGCTATCCACCTCCACAGCAATCGCCGGAGCGGTTTTCTCGGCTCTGGGAAGCTGCGAGGGCGCCTTGGCCGCCCAACAAATAGCCGCCATAGCGGAGGGCGAGGACAACCGCGGGCTGGCGCTGCTGCTGCCCATAATCCCGGCCATCGCGTGGGTGCTCTTCAACATTCTGCAGCCGGCCCTGAACCAGCTGAACGGCATGCGCAACAGCAAGGGCCTCATCGTTGGGCTGGGCCTCGGCGGCCTGCTGGGCCTGGTCGCGGCGCCGCATGCGTTGGCCTCTGAAATCGCTGAGGCGACTAACGACAACAGAGGTCAGCTTCTGCTGTTTGTGGTGACGCCGGCTATTGCCTGGGTTCTCTACAACATCCTGCAGCCTGCGCTGAACCAGATCAACAGGATGAGATCTTAG 534 0.5993 MAATISAMATINAKCLNTKLPNPNPNPKLIPSKPTTLPLPKLSTSTAIAGAVFSALGSCEGALAAQQIAAIAEGEDNRGLALLLPIIPAIAWVLFNILQPALNQLNGMRNSKGLIVGLGLGGLLGLVAAPHALASEIAEATNDNRGQLLLFVVTPAIAWVLYNILQPALNQINRMRS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02066 177 Hamap Photosystem II protein Y [psbY]. 76 110 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Cca09g02066 177 Pfam Photosystem II protein Y (PsbY) 143 175 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Cca09g02066 177 Pfam Photosystem II protein Y (PsbY) 76 108 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Cca09g02066 177 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 177 IPR038760 GO:0009523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02066 Cca-Chr9 45744926 45745935 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02066 K02723 - gmx:100779397 184.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02066 09 45744926 45745935 Cca01g00139 01 1358653 1359847 PCT