Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00139 ATGGCAGCCACCATAGCAACAACAGCGATGGCCATCATAAACTCAAAGTGCCTAAACCCAACCAAGCTCCACAACAGCCCCAAGCTCGCACTCGCAGTGCCTTCAAAACCCACCCTCTTGTCCCCCCACAACCTCCCAAAGGGCCTCCACGTGTCCACCACGGCGCTCGCCGGCGCAACGTTCTGGACCCTCGGCAACTGCGACGCGGCCTTCGCGGCGCAGCAGATCGCCCAAATAGCGGAGGGCGACAACCGCGGCCTCGCGCTGCTGCTTCCGATAATCCCCGCCATCGCGTGGGTCCTCTTTAACATTCTGCAGCCTGCGCTCAACCAGCTCAACCGCATGCGGAGCACCAAGGGGGTTGTAAttgggcttgggcttgggcttggcctgggagcctcgggcctggTGTCCGGCCCGGAAGCTTCGGCTGGTGAGATGGGCTTGATTGCGGATGCTGCTGCTGCGGCGGCGAGTGACAACCGGGGGCAGCTTCTTCTGTTTGTGGTTGCGCCGGCGATTGTTTGGGTTCTCTACAACATTTTGCAACCCGCGCTTAACCAACTCAACAGGATGAGATCTGAGTGA 588 0.5578 MAATIATTAMAIINSKCLNPTKLHNSPKLALAVPSKPTLLSPHNLPKGLHVSTTALAGATFWTLGNCDAAFAAQQIAQIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQLNRMRSTKGVVIGLGLGLGLGASGLVSGPEASAGEMGLIADAAAAAASDNRGQLLLFVVAPAIVWVLYNILQPALNQLNRMRSE 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00139 195 Pfam Photosystem II protein Y (PsbY) 160 192 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Cca01g00139 195 Pfam Photosystem II protein Y (PsbY) 83 115 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Cca01g00139 195 Hamap Photosystem II protein Y [psbY]. 83 117 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Cca01g00139 195 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 194 IPR038760 GO:0009523
Cca01g00139 195 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00139 Cca-Chr1 1358653 1359847 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00139 K02723 - gmx:100814665 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00139 01 1358653 1359847 Cca01g00139 01 1358653 1359847 ECH
Cca09g02066 09 45744926 45745935 Cca01g00139 01 1358653 1359847 PCT