Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01783 ATGGAAGAAGAAGAAGAAGGGCTTGCCATGCTCATCACTCACTCTCTCTCTCCGTCTTTCACCCCTTCACTACCCAGACGGTCCTTCTTTGACATTGATGATTACTCCGTAGATGACTTCTACAGCCTTGTAATGGCAGCTGGAAAGTCTGGAAGTTTCAGGATGGCGGAACCTCTAAAGCATCCATCTAAGAAGTTTCGAAGAGATAGGAGCAGGGGAAAATCATCTGGAAGGTCCTCCAGGGATGAAGCTATGGAACAACAAATTTGGAAAGATTTGCCTGAGGATCTATTTGAGCCTGTGATTGCACGTCTTCCCTTTGCCACATTTTTCCGCTTCCGCTCTGTATGCCAACGATGGAATTCCTTGCTGACTTCTCAAAGTTTTTCTCAGCATTGTGCTCAAGTCCCACGAGCAAACCCATGGTTTTACATAAGTCATGAACATGCAAATTCGGGATCCATGTATGACCCTTCTATGAAGAAATGGTACCATCCCACTATATCAACACTGCCTGCGAAGTTGATGGTTCTACTTCTACCAGTGGCTTCTGCAGGGGGTCTAGTTTGCTTTCTTGACATTTATCATCAAAATTTATATGTTTGTAACCCTTTGACTCAATCATTAAAGGAATTACCAACTCAGTCAGTTAGGCTCTGGTCTCGTGCTGCTGTAGGGATGACAGTAAATGGAAACTCAACTGGTACTGGCTACAAGATCCTATTGGTGGGTTGTGATGCAGAATATCAAATTTATGATTCAGTAACAAAGTCTTGGAGCCATCCAGGAAACATGCCTGCAGATATCAAGCTGCCTCTGTCACTCTATTTTAGGTCACAAGCCATTTCTATCGATAGCACCCTGTACTTCATGCATTCAGATCCCGAAGGGATTGTATCCTATGACATGGCAACTGGGGTTTGGACACAGTACATAATCCCCGCACCATCGGATCTGACTGACCGCACACTGGCTGAGTGTGATGGCCGGATATTGCTTGTGGGGTTGCTCACGAAGAATGCAGCCACATGCATATGCATATGGGAGCTGCAGAAGATGACTTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCTTGGGAAACAAAGGCTTGCTCATGCTATCCTTGAGATCAAGACAAATGAATCGATTGGTTACCTACAACATAGCAAGTAGGGAATGGGTGAAGGTTCCTAGCTGTGTGGTGCCACATGGAGGAAAGCGGCAATGGATAACACATGGTACTGCATTTTATCCATGCCTCACTATAATGGCTTGA 1323 0.4505 MEEEEEGLAMLITHSLSPSFTPSLPRRSFFDIDDYSVDDFYSLVMAAGKSGSFRMAEPLKHPSKKFRRDRSRGKSSGRSSRDEAMEQQIWKDLPEDLFEPVIARLPFATFFRFRSVCQRWNSLLTSQSFSQHCAQVPRANPWFYISHEHANSGSMYDPSMKKWYHPTISTLPAKLMVLLLPVASAGGLVCFLDIYHQNLYVCNPLTQSLKELPTQSVRLWSRAAVGMTVNGNSTGTGYKILLVGCDAEYQIYDSVTKSWSHPGNMPADIKLPLSLYFRSQAISIDSTLYFMHSDPEGIVSYDMATGVWTQYIIPAPSDLTDRTLAECDGRILLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNIASREWVKVPSCVVPHGGKRQWITHGTAFYPCLTIMA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01783 440 Pfam F-box domain 90 129 IPR001810 GO:0005515
Cca09g01783 440 MobiDBLite consensus disorder prediction 61 85 - -
Cca09g01783 440 SMART fbox_2 93 133 IPR001810 GO:0005515
Cca09g01783 440 Gene3D - 140 427 IPR015915 GO:0005515
Cca09g01783 440 PANTHER BNAA07G08860D PROTEIN 29 438 - -
Cca09g01783 440 SUPERFAMILY F-box domain 89 124 IPR036047 GO:0005515
Cca09g01783 440 ProSiteProfiles F-box domain profile. 87 132 IPR001810 GO:0005515
Cca09g01783 440 Gene3D - 90 129 - -
Cca09g01783 440 Coils Coil 439 440 - -
Cca09g01783 440 PANTHER F-BOX/KELCH-REPEAT PROTEIN 29 438 - -
Cca09g01783 440 SUPERFAMILY Galactose oxidase, central domain 115 421 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01783 Cca-Chr9 42441856 42444740 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01783 - - gmx:100775721 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00076 01 777976 781275 Cca09g01783 09 42441856 42444740 PCT