Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00076 ATGGAAGGGCTGGCCATGCTGAAGCAAGTAATTGGTCAGCTCCATTACCAATCTCTCATTCGCAACACTCTTCTCTTTCAACAACCCAGATGGACCTCTCTTGACATTGAAGATAGCTCTGTAGACGACTTTTGTGGCCTTGTAATGACAACTGGAAAGTCTGGCAGTTTCAGGATGTCAGAGCCTCTAAAGCCTCCACCTCCCAAGAAGTCTCGAAGAGATAGAAGCAGGGGCAAATCATCTGGAAGATCCAGTGCTACTGAAGTTATGGAACAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGTTCTGTCTGTCGGCATTGGAATTCCATGCTGACTTCTCAAAGTTTTTCTCAGCATTGTACTCAAATCCGACAAGAAAATCCATGGTTTTACACCATTACCCATGAAAATGTGAATTCGGGAGCCATGTATGACCCTTCTTTGAAAAAATGGCATCACCCAACTATATCAACACCGCCCACAAAGTTGATTGTTTTGCCAGTGGCTTCTGCTGGGGGTTTAGTTTGCTTTCTTGACATTGGTCATCGAAACTTCTTTGTTTGTAACCCACTGACTCAATCCTTCAAGGAGTTGCCAGCTCGATCAGTTAAGGTATGGTCTCGTGTTGCTGTAGGGATGACAACAAATGGAAACTCAACTGGTTCAGGCTACAAGATCTTATGGGTGGGTGGTGATGGAGAATATGAAGTGTATGACTCAGTCAGAAATTCTTGGAGTCGTCCAGGAAACATGCCTGCGGGTATGAAGCTGCCATTGTCACTCAACTTTAGGTCTCAGACCGTCTCTATTGACAGCACGCTTTACTTCATGCGTTCAGATCCAGAAGGGATTGTTTCCTATGATATGGCAACTGGGGTTTGGAAACAATATATAATCCCAGCGCCATTGCATCTGACCGACCACACTCTGGCTGAGTGTGATGGCCAGATCATGCTTGTGGGTTTGCTCACAAAAAATGCAGCTACATGTGTATGCATATGGGAGCTGCAGAGAATGACACTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCACTTAGATCAAAACAAATGAACCGATTGGTTACTTACAACATAGCTAGGAAAGAATGGCTGAAGGTTCCCGGGTGCGTGGTGCCACGTGGGAGAAAACGACAGTGGATAGCATGTGGTACTGCATTTCATCCATGCCTGACCGCAGTGGCATGA 1335 0.4532 MEGLAMLKQVIGQLHYQSLIRNTLLFQQPRWTSLDIEDSSVDDFCGLVMTTGKSGSFRMSEPLKPPPPKKSRRDRSRGKSSGRSSATEVMEQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRHWNSMLTSQSFSQHCTQIRQENPWFYTITHENVNSGAMYDPSLKKWHHPTISTPPTKLIVLPVASAGGLVCFLDIGHRNFFVCNPLTQSFKELPARSVKVWSRVAVGMTTNGNSTGSGYKILWVGGDGEYEVYDSVRNSWSRPGNMPAGMKLPLSLNFRSQTVSIDSTLYFMRSDPEGIVSYDMATGVWKQYIIPAPLHLTDHTLAECDGQIMLVGLLTKNAATCVCIWELQRMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIARKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTAVA 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00076 444 SUPERFAMILY F-box domain 88 170 IPR036047 GO:0005515
Cca01g00076 444 SUPERFAMILY Galactose oxidase, central domain 134 425 IPR011043 -
Cca01g00076 444 PANTHER BNAA07G08860D PROTEIN 36 443 - -
Cca01g00076 444 Gene3D - 133 434 IPR015915 GO:0005515
Cca01g00076 444 Gene3D - 95 132 - -
Cca01g00076 444 MobiDBLite consensus disorder prediction 55 88 - -
Cca01g00076 444 PANTHER F-BOX/KELCH-REPEAT PROTEIN 36 443 - -
Cca01g00076 444 SMART fbox_2 98 138 IPR001810 GO:0005515
Cca01g00076 444 Pfam F-box domain 95 134 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00076 Cca-Chr1 777976 781275 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00076 - - gmx:100810179 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00076 01 777976 781275 Cca09g01783 09 42441856 42444740 PCT