Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01777 ACCGTGCTCAAGGACGCCCCCGATCTCCGGGCCCACACCGTCCGCTACCGCACGCAGCTCCGCGAGGCCGACCACCTACTCTCCAGCTACCGCTCCGAGGCCGCCTGCTCGCCGGCCTCCGCCACGCTCCGCGGCAACGAGCGCTGCCGCCTGGCGCTGCACAACCTCCCGGACGAGGTCTACACCACGGAGTGGGACCTCGTCATGATCGACGCGCCCAAGGGCTACTTCGCGGAGGCGCCCGGGAGGATGGCGGCGATCTTCTCCGCCGCGGTCATGGCGAGGGACAGGAAGGGATCCGGTGTGACGCACGTGTTCCTGCACGATGTGGATCGGAAGGTGGAGAAGATTTACGCGGAGGAGTTTCTCTGTCGGAAGAATTTGGTCAAAGGTGTTGGCAGGCTGTGGCACTTCCAGATTCCGCCTATGTCCAATCATACTCGCGGCGGCGACGCCACTTTCTGTTAG 468 0.6517 TVLKDAPDLRAHTVRYRTQLREADHLLSSYRSEAACSPASATLRGNERCRLALHNLPDEVYTTEWDLVMIDAPKGYFAEAPGRMAAIFSAAVMARDRKGSGVTHVFLHDVDRKVEKIYAEEFLCRKNLVKGVGRLWHFQIPPMSNHTRGGDATFC 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01777 155 Pfam Polysaccharide biosynthesis 2 138 IPR021148 -
Cca09g01777 155 TIGRFAM A_thal_3515: uncharacterized plant-specific domain TIGR01627 4 155 IPR006514 GO:0045492
Cca09g01777 155 PANTHER POLYSACCHARIDE BIOSYNTHESIS PROTEIN 1 146 - -
Cca09g01777 155 PANTHER OS11G0490100 PROTEIN 1 146 IPR006514 GO:0045492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01777 Cca-Chr9 42388103 42388570 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01777 - - pvu:PHAVU_002G173400g 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00080 01 829282 830658 Cca09g01777 09 42388103 42388570 PCT