Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00080 ATGAAGAACCGGTATCCGGTGCCGGAGAAACGGTGGTTCGTGGTTCTCTTGGTGGTTGGGTTGATCGGAGTGGTGCTTTACCTCACGAGCGCGATCCGAACCTCGGAAACGGTGGTGTGCCCAGGCGCGTTGGGGATCCGAACCCGAACCGAATTCAATTACGAACCGTCCCCGATCCAGCTCCGCGCGATTCTCCACTACGCGACCTCGCGCGTGGTGCCCCAACAGTCCGTGGCAGAGATCAAGATCAGCCTGGACGTGTTAAAATCCCTGGGCCGGCCCGTCAACTTCCTGGTGTTCGGGCTGGGCCACGACTCCCTCATGTGGGCCTCGTTCAACCCAGGCGGCACGACGGTTTTCTTGGAGGAGGACCCAAAGTGGGTCCACTCGATCCTGAAGGACGCGCCGGGCTTGCGGGCCCACACGGTGCGTTACAGGACCCAGCTGCGCGAGGCCAAGGCGCTGCTAACCTCGTACAAGACCGAACCCACGTGCGCGGCGTCGACGGCGTACCTGCGGGGGAACGAAGCGTGTAAGCTGGCGCTGCAGAATCTTCCGGAGGAGGTTTACGAGACGGAGTGGGACATGATAATGATCGATGCGCCCAAAGGGTACTTCGCGGAGGCGCCGGGGAGGATGGCGGCGGTTTTCTCCGCCGCGGTGATGGCCCGCAACCGGAAGGGATCCGGTGTGACGCACGTGTTTCTGCATGACGTGGATCGCAAGGTGGAGAAGGTTTATGCCTTGGAGTTTCTTTGTCGGAGGAACATGGTCAACGGTGCTGGCAGGCTTTGGCACTTTCAGATACCTCCTTCGCATTCCAATTCTTCGCGTTTCTGCTCCTAG 846 0.6064 MKNRYPVPEKRWFVVLLVVGLIGVVLYLTSAIRTSETVVCPGALGIRTRTEFNYEPSPIQLRAILHYATSRVVPQQSVAEIKISLDVLKSLGRPVNFLVFGLGHDSLMWASFNPGGTTVFLEEDPKWVHSILKDAPGLRAHTVRYRTQLREAKALLTSYKTEPTCAASTAYLRGNEACKLALQNLPEEVYETEWDMIMIDAPKGYFAEAPGRMAAVFSAAVMARNRKGSGVTHVFLHDVDRKVEKVYALEFLCRRNMVNGAGRLWHFQIPPSHSNSSRFCS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00080 281 Pfam Polysaccharide biosynthesis 79 267 IPR021148 -
Cca01g00080 281 PANTHER OS11G0490100 PROTEIN 1 280 IPR006514 GO:0045492
Cca01g00080 281 Gene3D Vaccinia Virus protein VP39 69 280 IPR029063 -
Cca01g00080 281 PANTHER POLYSACCHARIDE BIOSYNTHESIS PROTEIN 1 280 - -
Cca01g00080 281 TIGRFAM A_thal_3515: uncharacterized plant-specific domain TIGR01627 62 280 IPR006514 GO:0045492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00080 Cca-Chr1 829282 830658 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00080 - - gmx:100791951 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00080 01 829282 830658 Cca09g01777 09 42388103 42388570 PCT