Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01775 ATGAGAACAAGGAGAGGGGCGTCTTATTCTGGCCTTGTCCCAAGGATGTGCTCCCTCGCAAAGACAAACAAGGATCTCcacatgcatatgcatatgcacatgcacatgcatgtccgcaccggagactctcttatgcatatccatagccGGAAGAGGCTCAAGAAAACGCCGGAAAAACCCGCCGGAGATTATGATTTTTTTGACTCTTTACCCGACGACCTTGTTATCTCTATTTTCTGCAAGCTTAGTTCCACCGCCGCTTCTCCCTCGGATTTCGTCAATGTTTTAATCACGTGTAAAAGATTAAACAGATTAGGGCTTCATTCGCTTGTGTTATCAAAAGCCTCGCCCAGAACTTTCTCTGTTAGAGCCAAAGATTGGTGCGATTCCGCACACCGTTTCCTCAAACACTGTGCCGATGCGGGAAATGTTGAAGCCTGTTACACTTTAGGCATGATTCGCTTCTACTGTTTGCAAAACCGAGGCAGCGGCGCCTCCTTGATGGCCAAGGCCGCGATTAACTCCCACGCGCGGGCGCTCTACTCGCTCGCGGTGATTCAGTTCAACGGCAGCGGCGGGACCAAGAGCGACAAGGACCTACGCGCCGGCGTGGCGCTCTGCGCCAGAGCGGCGTTTCTCGGCCACGTCGACGCGCTGCGCGAGCTCGGCCACTGCCTGCAGGACGGTTACGGCGTGCGGCAGAACATCTCCGAGGGGCGCCGCTTCCTCGTGCAGGCCAACGCGCGGGAGCTCGCCGCCGTGATGTCCACCGGCGCCGCCGCGCGCCACTGGCTGACGCTCTGTTCGCACGCCGGGTGCGGGAGGCCGGAGACGAGGAAGCACGAGTTTCGACGGTGCTCTGTGTGTGGCGCGGTGAATTATTGCTCGCGCGCGTGCCAGGCTCTTGATTGGAAGTTCCGCCACAAGAAGGAGTGCGCCCCCGTAGAGCGGTGGCTCGACGAGGACGGCGAAGATGTCGGTGGCGGCGATGATAGCGACGGCGAGGTAATGGTGGATAGTTAG 1023 0.5455 MRTRRGASYSGLVPRMCSLAKTNKDLHMHMHMHMHMHVRTGDSLMHIHSRKRLKKTPEKPAGDYDFFDSLPDDLVISIFCKLSSTAASPSDFVNVLITCKRLNRLGLHSLVLSKASPRTFSVRAKDWCDSAHRFLKHCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAINSHARALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNISEGRRFLVQANARELAAVMSTGAAARHWLTLCSHAGCGRPETRKHEFRRCSVCGAVNYCSRACQALDWKFRHKKECAPVERWLDEDGEDVGGGDDSDGEVMVDS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01775 340 MobiDBLite consensus disorder prediction 323 340 - -
Cca09g01775 340 MobiDBLite consensus disorder prediction 320 340 - -
Cca09g01775 340 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 266 340 - -
Cca09g01775 340 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 47 266 - -
Cca09g01775 340 Gene3D Tetratricopeptide repeat domain 112 265 IPR011990 GO:0005515
Cca09g01775 340 Gene3D - 266 314 - -
Cca09g01775 340 SUPERFAMILY HIT/MYND zinc finger-like 265 317 - -
Cca09g01775 340 Pfam MYND finger 272 312 IPR002893 -
Cca09g01775 340 SUPERFAMILY F-box domain 54 123 IPR036047 GO:0005515
Cca09g01775 340 PANTHER MYND DOMAIN-CONTAINING 47 266 IPR044508 -
Cca09g01775 340 PANTHER MYND DOMAIN-CONTAINING 266 340 IPR044508 -
Cca09g01775 340 SUPERFAMILY HCP-like 128 247 - -
Cca09g01775 340 ProSiteProfiles Zinc finger MYND-type profile. 270 312 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01775 Cca-Chr9 42326261 42328019 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01775 - - ccaj:109810718 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00084 01 881845 883622 Cca09g01775 09 42326261 42328019 PCT