Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00084 ATGAGAACCAGAAGAGGCCTCTCTTATCCTTCACTCTCAACAACCATGTCTTCCGACCTCATCGTTTCCACAAAACGCTACAAAAGAAAATCACCCCACAACTTCTTTCACTCTCTCCCCGACGACCTCGTACTCTCCATCCTCTGCAAACTCACCTCCACCGCCACTTCCCCTTCCGATTTCATTAGCGTTTTAATAACGTGCAAGAGACTAAACTCTTTAGGCCTTCACTCTCTGGTGTTATCAAAAGCATCCCACAAAACATTCTCAGTCAAAGCAAAAAACTGGTGCGACGGCGCCCACCGTTTTCTCAAGCACTGCGCGGACGCCGGAAACATTGAAGCGTGTTACACTCTCGGCATGATTCGGTTTTATTGTTTGCAGAACCGAGGGAGCGGCGCGTCGCTGTTGGCAAAGGCGGCGATTCACTCCCACGCGCCAGCGCTGTACTCGCTCGCGGTGATTCAGTTCAACGGGAGCGGAGGCACGAAAAGCGACAAGGACCTACGCGCGGGAGTGGCGCTGTGCGCACGCGCAGCGTTCCTCGGTCACATCGACGCGCTTCGCGAGCTTGGGCATTGCTTGCAAGACGGTTACGGCGTTAAGCAGAACGTAACGGAGGGGCGGCGCTTTTTGGTGCAGGCCAACGCGCGTGAACTTGCCGCGGTGCTCTCTGCCGCGACTGGGAAGCGCCCCTGGCTGACGTGGACGCTCCACCCGCGGGTCAGGTCTCCTACCGGGTCAGGTTGTCCGCTTTTAAGTGATTACGGTTGCAACGTGCCGGCGCCGGAAGCCCACCCCGCGAGCCGGTTTATGGCGGAGTGGTTCTCCGACCGGGTCAGGTCACCGGGTCCGGGTATGAGGCTTTGTTCTCATTCGGGTTGCGGGCGACCCGAGACGAGGAAGCACGAGTTTCGAAGGTGTTCCGTGTGTGGCGCGGTAAATTATTGTTCACGCGCTTGTCAAGCGCTTGATTGGAAGTTCCGGCACAAGGCGGAGTGTGCCCCCGTGGAGCGGTGGCTGGATGACGACGGCGAAGACGCTGCCAGTGATGACGGCGGCGCGGTCGGTGAGGGTTTATGA 1083 0.5799 MRTRRGLSYPSLSTTMSSDLIVSTKRYKRKSPHNFFHSLPDDLVLSILCKLTSTATSPSDFISVLITCKRLNSLGLHSLVLSKASHKTFSVKAKNWCDGAHRFLKHCADAGNIEACYTLGMIRFYCLQNRGSGASLLAKAAIHSHAPALYSLAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHIDALRELGHCLQDGYGVKQNVTEGRRFLVQANARELAAVLSAATGKRPWLTWTLHPRVRSPTGSGCPLLSDYGCNVPAPEAHPASRFMAEWFSDRVRSPGPGMRLCSHSGCGRPETRKHEFRRCSVCGAVNYCSRACQALDWKFRHKAECAPVERWLDDDGEDAASDDGGAVGEGL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00084 360 SUPERFAMILY HIT/MYND zinc finger-like 288 339 - -
Cca01g00084 360 Gene3D - 282 338 - -
Cca01g00084 360 SUPERFAMILY HCP-like 95 215 - -
Cca01g00084 360 SUPERFAMILY F-box domain 30 92 IPR036047 GO:0005515
Cca01g00084 360 Pfam MYND finger 295 334 IPR002893 -
Cca01g00084 360 ProSiteProfiles Zinc finger MYND-type profile. 292 334 IPR002893 -
Cca01g00084 360 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 24 356 - -
Cca01g00084 360 Gene3D Tetratricopeptide repeat domain 80 231 IPR011990 GO:0005515
Cca01g00084 360 PANTHER MYND DOMAIN-CONTAINING 24 356 IPR044508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00084 Cca-Chr1 881845 883622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00084 - - gmx:100798136 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00084 01 881845 883622 Cca09g01775 09 42326261 42328019 PCT