Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01766 ATGCCTGGTTTTGTGGCTGAAAAGAAGAGATTTTCTGAGCCAAATATGTGTTTTCCCAATTTGGCCAACCATGATGAACGGCCTCTCACAAAAAGCAATCATTATGTGAGTGAGGCTCTGGATGATGTTGATGATGGTAGTAGCCCCATCCTACCTGGGCTGCCTGATGATGTTTCAAAGCACTGCCTTGCACTCGTGCCTCGTTCTAACTCCCCTGCAATGGGTGGTGTCTGTAAGAGATGGAGGTGCTTTATTCGAAGCAAGGAATTCATAACTGTGAGAAAATTGGCTGGGATGCATGAGGAATGGCTCTATATCTTGACAGCAGGTAGTGAAGGAAATGGGAGCCAGTGGGAGGTCATGGATTGTCTCGGTCAAAATCGCCGTTCTCTTCCGCTGATGCCTGGTCCAGCGAAGGCTGGCTTTGGGGTAGTGGTTCTTAATGGAAAGCTCCTTGTTATGGCTGGTTATTCATCGATTGATGGAACTACCTCTGTCTCAGCAGAGGTTTACCAATATGATTCTTGCCTCAACAGCTGGAGCAGATTGTCAAACATGAATGTGGCACGCTATGACTTTGCTTGTGCTGAAGTCAATGGCTTGGTTTATGCTGTTGGCGGCTACGGCACAGACGGTGACAGTCTCTCCAGTGCAGAGGTGTATGACCCTGATACCGACAAATGGACGCCGATAGAGAGCCTTCGTCGCCCGAGATGGGGTTGCTTTGCCTGTGGATTTGAGGGGAAGCTGTATGTGATGGGGGGAAGGTCAAGATTTACAATTGGAAACTCCAAGTTTGTTGATGTGTACAACCCCAAGAAGCACAACTGGTGTGAGATGAAAAACGGGTGTGTCATGGTCACTGCTCATGCAGTGCTGGAAAAGAAGCTTTTCTGTATGGAGTGGAAGAATCAGCGGAAGTTGGCAATATTCAATCCTGAGGACAATTCATGGAAAATGGTTCCGGTTCCTTTGACAGGGAGTTCAAGCATTGGTTTTCGGTTTGGGATACTGGATGGTAAGTTGTTGCTGTTCTCACTTGAGGAAGAGCCTTCATACAAGACTTTGTTGTATGATCCAAATGCAGCCCCTGGATCTGAATGGCAGACTTCTGATATAAGGCCATCTGGTTTGTGCTTATGCTGTGTAACTATCAAGGCCTGA 1164 0.4725 MPGFVAEKKRFSEPNMCFPNLANHDERPLTKSNHYVSEALDDVDDGSSPILPGLPDDVSKHCLALVPRSNSPAMGGVCKRWRCFIRSKEFITVRKLAGMHEEWLYILTAGSEGNGSQWEVMDCLGQNRRSLPLMPGPAKAGFGVVVLNGKLLVMAGYSSIDGTTSVSAEVYQYDSCLNSWSRLSNMNVARYDFACAEVNGLVYAVGGYGTDGDSLSSAEVYDPDTDKWTPIESLRRPRWGCFACGFEGKLYVMGGRSRFTIGNSKFVDVYNPKKHNWCEMKNGCVMVTAHAVLEKKLFCMEWKNQRKLAIFNPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYKTLLYDPNAAPGSEWQTSDIRPSGLCLCCVTIKA 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01766 387 SUPERFAMILY F-box domain 48 91 IPR036047 GO:0005515
Cca09g01766 387 Pfam Kelch motif 189 234 IPR006652 GO:0005515
Cca09g01766 387 Pfam Kelch motif 140 187 IPR006652 GO:0005515
Cca09g01766 387 Gene3D - 88 385 IPR015915 GO:0005515
Cca09g01766 387 SMART fbox_2 54 94 IPR001810 GO:0005515
Cca09g01766 387 SMART kelc_smart 249 297 IPR006652 GO:0005515
Cca09g01766 387 SMART kelc_smart 150 200 IPR006652 GO:0005515
Cca09g01766 387 SMART kelc_smart 201 248 IPR006652 GO:0005515
Cca09g01766 387 PANTHER KELCH REPEAT F-BOX PROTEIN 1 387 - -
Cca09g01766 387 SUPERFAMILY Kelch motif 101 347 IPR015915 GO:0005515
Cca09g01766 387 Pfam F-box domain 53 90 IPR001810 GO:0005515
Cca09g01766 387 PANTHER OS02G0202900 PROTEIN 1 387 IPR045887 -
Cca09g01766 387 Pfam Kelch motif 238 282 IPR011498 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01766 Cca-Chr9 42226169 42228239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01766 54 232 Miscellaneous Gene Families AT4G33900 27.835 1.14e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01766 - - gmx:100815474 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00097 01 965780 967439 Cca09g01766 09 42226169 42228239 PCT