Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00097 ATGCCTGGTTTTGCTGTTGGAAAGAAGAGATTTATCCAGCCAAACATGTGTTTCACCAATTTGATCAATCAAGATAAATCAACTCTTTCACAAAGCAATCATTGTTTGATCCCCAAGGCACTGAATAAAGATTATAGCCCCATTCTACCTGGTCTGCCAGATGATGTGGCAGAGTATTGCCTAGCACTTGTGCCTCGTTCCAATTTCCCTGCTATGGGTGGAGTCAGTAAGAGATGGAGGTCGTTTATTCAAAGCAAAGAATTTGCTACTGTGCGAAAATTGGCTGGTATGCTTGAGGAATGGCTCTATTTCTTAACAGTGGACTGTGAAGGAACGGAGAGTCATTGGGAGGTTATGGATTGTGTCGGTCAGAAATGCCGATCTCTTCCAGCAATGCCTGGTCCAGAAAAGGCTGGGTTCGGAGTGGTGGTTCTTGATGGAAAGCTTCTTGTCATGGCTGGTTATGCTACTATTGAAGGAACTGCCTTTGCCTCAGCTGAGGTTTACCAATATAATTCTTGCCTCAATAGCTGGAGCAAATTGTCAAACATGAATGTGGCTCGTTATGACTTCGCTTGTGCTGAAGTCAATGGCTTGGTTTATGCTGTTGGAGGCTATGGTGTGGATGGTGACAGTCTCTCCAGTGCTGAGGTGTATGATCCAGACACTGACAAGTGGACACTGATAGAGAGCATTCGTCGCCCGAGATGGGGTTGCTTTGCTTGTGGATTTGAGGCTCATGCAGTATTGGGAAAGAAGTTGTTCTGCATAGAGTGGAAGAACCAGCGGAAGCTGGCTATATTCAGTCCAGAGGACAATTCATGGAAAATGGTACAAGTTCCATTGACAGGTAGCTCAAGTATTGACTTTAGATTTGGGATACTGGATGAAAAGTTGCTGCTATTCCCTCTGGAGGCTGAACCTGCTTGTCAAACATTGTTATATGATCCAAACGCAGCTCTGGGGTCAGAGTGGCAAACTTCTGACATCAGGCCATCTGGTTTGTGCTTGTATTCTGTAACAATCAAGGCATAA 1035 0.4483 MPGFAVGKKRFIQPNMCFTNLINQDKSTLSQSNHCLIPKALNKDYSPILPGLPDDVAEYCLALVPRSNFPAMGGVSKRWRSFIQSKEFATVRKLAGMLEEWLYFLTVDCEGTESHWEVMDCVGQKCRSLPAMPGPEKAGFGVVVLDGKLLVMAGYATIEGTAFASAEVYQYNSCLNSWSKLSNMNVARYDFACAEVNGLVYAVGGYGVDGDSLSSAEVYDPDTDKWTLIESIRRPRWGCFACGFEAHAVLGKKLFCIEWKNQRKLAIFSPEDNSWKMVQVPLTGSSSIDFRFGILDEKLLLFPLEAEPACQTLLYDPNAALGSEWQTSDIRPSGLCLYSVTIKA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00097 344 Gene3D - 31 329 IPR015915 GO:0005515
Cca01g00097 344 PANTHER OS02G0202900 PROTEIN 246 344 IPR045887 -
Cca01g00097 344 PANTHER OS02G0202900 PROTEIN 1 246 IPR045887 -
Cca01g00097 344 SUPERFAMILY Kelch motif 99 302 IPR015915 GO:0005515
Cca01g00097 344 Pfam F-box domain 51 88 IPR001810 GO:0005515
Cca01g00097 344 PANTHER KELCH REPEAT F-BOX PROTEIN 246 344 - -
Cca01g00097 344 PANTHER KELCH REPEAT F-BOX PROTEIN 1 246 - -
Cca01g00097 344 Pfam Kelch motif 187 229 IPR006652 GO:0005515
Cca01g00097 344 Pfam Kelch motif 138 185 IPR006652 GO:0005515
Cca01g00097 344 SUPERFAMILY F-box domain 46 89 IPR036047 GO:0005515
Cca01g00097 344 SMART kelc_smart 148 198 IPR006652 GO:0005515
Cca01g00097 344 SMART kelc_smart 199 246 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00097 Cca-Chr1 965780 967439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00097 52 230 Miscellaneous Gene Families AT4G33900 26.943 2.21e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00097 - - gmx:100802912 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00097 01 965780 967439 Cca09g01766 09 42226169 42228239 PCT