Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01751 ATGGGTTCTCTACCCCAACCAAACTCACTCTTTTTCAAAACTGGACCTAGCCGGAAAGTAGGTATTGAGGTTTTGGCCTTTCAACGCTTCACTTGGAATAGTTCATTTCCCTCTGTGAAGCTTGAAGCAAGCCAGAACATGGAAGCACCTGTTGTTGTAGTCACTGGAGCCTCCAGAGGCATTGGCCGTGCAATTGCACTTTCCTTCGGCAAAGCAGCTTGCAAGGTCTTGGTCAACTATGCCAGGTCATCCACACAAGCTGAAGAGGTTTCCAACTTGATTGAGGCTTTTGGTGGAAAAGCTCTTACCTTTGCGGGAGATGTTTCAAATGAGGCTGATGTGGAGTCTATGATTAAAACTGCAGTTGATGCTTGGGGAACTGTTGATGTGTTGGTAAATAATGCAGGAGTTACTCGGGATGGTTTGTTAATGAGAATGAAGAAATCACAATGGCAGGACGTTATTGATCTGAATCTCACTGGTGTTTTTCTTTGCACACAGGCAGCAGCAAAGATTATGGCGATGAAAAAGAAGGGAAGGATAGTGAATATTGCATCAATTATTGGTCAGGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAGGCAGGAGTAATTGGCCTCACAAAAAGTGCTGCCAGAGAATATGCTAGCAGAAACATCACTGTTAATGCAGTTGCCCCTGGCTTTATTGCATCTGATATGACTGCCAAGCTACGACCAGACATTGAGAAAAAAAGATTAGAGTTAATTCCCTTGGGGAGATTTGGCCAACCTGAAGAAGTTGCTGGACTTGTGGAATTCTTGGCTCTTAATCCTGCTGCTAAATACATCACTGGCCAGGTACTCACCATTGATGGAGGAATGGCGATGTAA 879 0.4425 MGSLPQPNSLFFKTGPSRKVGIEVLAFQRFTWNSSFPSVKLEASQNMEAPVVVVTGASRGIGRAIALSFGKAACKVLVNYARSSTQAEEVSNLIEAFGGKALTFAGDVSNEADVESMIKTAVDAWGTVDVLVNNAGVTRDGLLMRMKKSQWQDVIDLNLTGVFLCTQAAAKIMAMKKKGRIVNIASIIGQVGNVGQANYSAAKAGVIGLTKSAAREYASRNITVNAVAPGFIASDMTAKLRPDIEKKRLELIPLGRFGQPEEVAGLVEFLALNPAAKYITGQVLTIDGGMAM 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01751 292 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 186 214 IPR020904 GO:0016491
Cca09g01751 292 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 40 292 - -
Cca09g01751 292 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 40 292 - -
Cca09g01751 292 PRINTS Glucose/ribitol dehydrogenase family signature 51 68 IPR002347 -
Cca09g01751 292 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Cca09g01751 292 PRINTS Glucose/ribitol dehydrogenase family signature 173 189 IPR002347 -
Cca09g01751 292 PRINTS Glucose/ribitol dehydrogenase family signature 199 218 IPR002347 -
Cca09g01751 292 PRINTS Glucose/ribitol dehydrogenase family signature 220 237 IPR002347 -
Cca09g01751 292 PRINTS Glucose/ribitol dehydrogenase family signature 253 273 IPR002347 -
Cca09g01751 292 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 51 291 IPR036291 -
Cca09g01751 292 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 52 291 IPR011284 GO:0004316|GO:0006633|GO:0051287
Cca09g01751 292 CDD BKR_SDR_c 51 290 - -
Cca09g01751 292 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 137 IPR002347 -
Cca09g01751 292 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 179 187 IPR002347 -
Cca09g01751 292 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 199 218 IPR002347 -
Cca09g01751 292 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 50 230 - -
Cca09g01751 292 Pfam Enoyl-(Acyl carrier protein) reductase 56 290 - -
Cca09g01751 292 Gene3D - 49 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01751 Cca-Chr9 42043752 42046916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01751 42 292 Acyl Lipid Metabolism Gene Families AT1G24360 70.120 4.57e-130 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01751 K00059 - gmx:100811718 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00109 01 1084468 1088991 Cca09g01751 09 42043752 42046916 PCT