Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00109 ATGGCTTCCATTGCCGGATCCAACTGCGTCGCTCTCCGAACCGCCAACTTCGCCGCCTCCGGTAACCGGAAAATCGGTCAGATCCGGCATTGGTCTCCGATTCCGACGAATCTACGTTCCGTTTCCTCCGGTCTTCGCTTCCAATCGAACGCACCGTTTACCTCCTCCGGTGTGAGAGCGCAGGTTGCTACGTTTCAGGAAGCGGGAACCGGAGCGAATCTGAAAGTGGAAGCGCCGGTTGTAGTGGTGACCGGAGCTTCCAGAGGTATTGGCCGAGCGATTGCGCTGTCGTTAGGTAAAGCAGGTTGCAAGGTTCTGGTCAACTATGCTAGGTCATCCAAGGAAGCTGAGGAGGTTTCCAAGGAGATTGAGGCATTTGGTGGGCAAGCTCTCACATTTGGTGGAGATGTTTCTAACGAGGCTGATGTGGAGTCTATGATTAAAACTGCAGTTGATGCTTGGGGAACTGTCGATGTATTAATAAACAATGCAGGAATAACTAGAGATGGTTTACTAATGAGAATGAAGAAACCTCAGTGGCAGGAGGTTATTGATCTAAACCTCACTGGTGTTTTCCTTTGCATACAGGCTGCAGCAAAGGTTATGATGAAGAAAAAGAAGGGAAGGATTGTCAATATTGCATCAGTTGTTGGTTTGGTTGGCAATGTTGGACAAGCCAATTACAGTGCTGCAAAAGCAGGAGTAATTGGCCTGACAAAAACTGTTGCAAAGGAATATGCTAGCAGAAACATCACTGTTAATGCAGTTGCTCCAGGGTTTATTGCATCTGACATGACTGCCAAGCTAGGACAAGACACTGAAAAAAAGATTTTGGAGACAATCCCATTAGGAAGATATGGCCGACCAGATGAAGTTGCTGGACTGGTGGAATTCTTGGCTCTTAATCAAGCTGCCAGTTACATAACTGGGCAGGTTTTCACCATCGATGGAGGTATGGTGATGTAA 966 0.4752 MASIAGSNCVALRTANFAASGNRKIGQIRHWSPIPTNLRSVSSGLRFQSNAPFTSSGVRAQVATFQEAGTGANLKVEAPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEAFGGQALTFGGDVSNEADVESMIKTAVDAWGTVDVLINNAGITRDGLLMRMKKPQWQEVIDLNLTGVFLCIQAAAKVMMKKKKGRIVNIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRNITVNAVAPGFIASDMTAKLGQDTEKKILETIPLGRYGRPDEVAGLVEFLALNQAASYITGQVFTIDGGMVM 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00109 321 Gene3D - 78 321 - -
Cca01g00109 321 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 215 243 IPR020904 GO:0016491
Cca01g00109 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 166 IPR002347 -
Cca01g00109 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 216 IPR002347 -
Cca01g00109 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 228 247 IPR002347 -
Cca01g00109 321 CDD BKR_SDR_c 80 320 - -
Cca01g00109 321 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 79 259 - -
Cca01g00109 321 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 81 320 IPR011284 GO:0004316|GO:0006633|GO:0051287
Cca01g00109 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 80 321 IPR036291 -
Cca01g00109 321 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 19 321 - -
Cca01g00109 321 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 19 321 - -
Cca01g00109 321 Pfam Enoyl-(Acyl carrier protein) reductase 85 319 - -
Cca01g00109 321 PRINTS Glucose/ribitol dehydrogenase family signature 80 97 IPR002347 -
Cca01g00109 321 PRINTS Glucose/ribitol dehydrogenase family signature 155 166 IPR002347 -
Cca01g00109 321 PRINTS Glucose/ribitol dehydrogenase family signature 202 218 IPR002347 -
Cca01g00109 321 PRINTS Glucose/ribitol dehydrogenase family signature 228 247 IPR002347 -
Cca01g00109 321 PRINTS Glucose/ribitol dehydrogenase family signature 249 266 IPR002347 -
Cca01g00109 321 PRINTS Glucose/ribitol dehydrogenase family signature 282 302 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00109 Cca-Chr1 1084468 1088991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00109 2 321 Acyl Lipid Metabolism Gene Families AT1G24360 65.000 8.94e-150 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00109 K00059 - gmx:100809809 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00109 01 1084468 1088991 Cca09g01751 09 42043752 42046916 PCT