Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01749 ATGCCATCCTCTCACTTCCCTCTTCGCTGGGAGAGCACTGGAGACAAATGGTGGTATGCATCTCCAATTGATTATGCTGCTGCAAATGGCCTCTATGATCTGGTCACTGAGCTTCTCCACCTTGACACCAACCTCCTCATCAAGCTCACTTCCCTTCGCCGAATTCGCCGCCTTGAAACCGTGTGGGACGATGAGTCTAAGTTTGAGGATGTTGCCAAGTGCCGCGCCAAGGTTGCAAGGAATCTTATGCTCGAGTGTGAGACAGGAAGAGGGCACAACTCTCTCATCCGTGCAGGCTATGGTGGATGGCTTCTCTACACGGCTGCTTCAGCCGGTGATGTGGACTTTGTTCTTGAGTTGTTGGGGAGAGACCCTTTGTTGGTGTTTGGTGAAGGAGAGTATGGTGTCACTGACATGCTGTATGCTGCAGCCAGGGGCAAGAATTGTGAGGTCTTTAAGCTCTTGCTTCATTCTGCCCTCTCCAGAAAGGAGTGCCTTGGTGGCTGTGAAGAAGAATTGGAAGAGAAGTTGGATGAAGGTGATCGAGTTTTCAAGAAGGATGTGGTGAATAGGGCCATTCATGCTGCTGCCAGAGGAGGGAATTGGGAAATACTGAAGCAGCTTCTTTCTGGTGTTTCTCAGATTTTGTCCTATAGAGATGCACAAGGATGTACAGTCTTGCATGCAGCAGCTGCAAAAGGCCAGGTTGAGGTGGTGAAAAATCTAGTTGTATCTTATGATATCATCAACTCAACTGATGCTCAAGGCAATACAGCATTACATGTGGCTTCTTACAGAGGTTACCTACCCGTGGTAGAGATTCTGATTGGAGCATCTCCCTCATTAACAACGTTAACCAATCACTATGGAGATACTTTTCTTCACATGGCAGTGGTTGGTTTCAGAAGCCCTGGTTTCTGTAGACTGGACAAACACACTGAGCTCATGAAGCAATTGACAAGTGAAAAGATTGTGAACATGAAGGACATCATCAATGTCAGGAACCATGATGGAAGAACAGCTCTTCATGTTGCTTTGATTCATAATGTCCAATGTGATGTAGTGGAATTATTGATGTCTGTTCCATCAATTGATTTGAACATTCGTGATGCCGGTGGAATGACCCCTTTGGATCATCTTAGGCAAAGATCAAGATCAGCATCTTCAGAAATTTTAATCAAGCAGTTAATTTCAGCCGGAGGGATATCTAATTTTCAGGACTATGTAACAAGAAATGCCCTTGTTAATCATCTCAAGACTAATGGTATTAGAGGCAGTCCTGGAACATCATTTAGAATACCGGATGCAGAGATTTTGTTGTACACAGGCATTGAGAATTCATGTGATGCCAATTATGATAAGGCCAGTGTAGAATCAAATTCTTGGTCAAGTGAAATAAACAATTATGACTCAGCCAATTCTCCATGTAACAGCAAGTCTAGTTCTGTCAATTATGGTGCAAGACGTTTAATGTTTCTGCTCCGGAAAAGAGACACAAAAGAAGCAGCCTCAGATAATGATTCTGTGAATTCTTTCAGTTCAAGGAACAACAACTTGGAAGACTTTCCCATTCCATTGAGGCAAAGATACTCAAAAATGTGTTCTCTTCCAAACAACAAAAGAACACTATCTATAAGGACTTATCTTCCAAGTCCATCAGCCAAAAAATATTTCACTCAAGGCCTAATGCAAGGTGTGATTAAGGTAAAGCCACAAGTGCCTCTTCCTGTTCATTCAACTTCTAGTTTTTTTCAAGAACTATCTATCTCTTCTCATTCTTCGAATGATAAGCAAAAACGTGTTGATACAATGAGACCCTCTTGCTCCAATCGACCTATGGATGATGGTGGTACCCTACAGTTGAACTATAAGCAGGGCTCCTTCGACAAGAAATTGATGAACCGATATTTTTCTTTTGGAGCACATGAGCAGGTTTTGGAAGATGCAAATAGCTGCACAATGTCAAATCGCAGTCCAAAGCATTTTAGTTCTTTAGTTGCATAA 2004 0.4281 MPSSHFPLRWESTGDKWWYASPIDYAAANGLYDLVTELLHLDTNLLIKLTSLRRIRRLETVWDDESKFEDVAKCRAKVARNLMLECETGRGHNSLIRAGYGGWLLYTAASAGDVDFVLELLGRDPLLVFGEGEYGVTDMLYAAARGKNCEVFKLLLHSALSRKECLGGCEEELEEKLDEGDRVFKKDVVNRAIHAAARGGNWEILKQLLSGVSQILSYRDAQGCTVLHAAAAKGQVEVVKNLVVSYDIINSTDAQGNTALHVASYRGYLPVVEILIGASPSLTTLTNHYGDTFLHMAVVGFRSPGFCRLDKHTELMKQLTSEKIVNMKDIINVRNHDGRTALHVALIHNVQCDVVELLMSVPSIDLNIRDAGGMTPLDHLRQRSRSASSEILIKQLISAGGISNFQDYVTRNALVNHLKTNGIRGSPGTSFRIPDAEILLYTGIENSCDANYDKASVESNSWSSEINNYDSANSPCNSKSSSVNYGARRLMFLLRKRDTKEAASDNDSVNSFSSRNNNLEDFPIPLRQRYSKMCSLPNNKRTLSIRTYLPSPSAKKYFTQGLMQGVIKVKPQVPLPVHSTSSFFQELSISSHSSNDKQKRVDTMRPSCSNRPMDDGGTLQLNYKQGSFDKKLMNRYFSFGAHEQVLEDANSCTMSNRSPKHFSSLVA 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01749 667 ProSiteProfiles Ankyrin repeat profile. 222 254 IPR002110 GO:0005515
Cca09g01749 667 Pfam Ankyrin repeat 337 370 IPR002110 GO:0005515
Cca09g01749 667 ProSiteProfiles Ankyrin repeat region circular profile. 222 243 - -
Cca09g01749 667 Gene3D - 12 417 IPR036770 -
Cca09g01749 667 ProSiteProfiles Ankyrin repeat region circular profile. 255 276 - -
Cca09g01749 667 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 1 661 - -
Cca09g01749 667 Pfam Ankyrin repeats (3 copies) 193 282 IPR002110 GO:0005515
Cca09g01749 667 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 661 - -
Cca09g01749 667 ProSiteProfiles Ankyrin repeat profile. 255 287 IPR002110 GO:0005515
Cca09g01749 667 SUPERFAMILY Ankyrin repeat 104 393 IPR036770 -
Cca09g01749 667 SMART ANK_2a 372 405 IPR002110 GO:0005515
Cca09g01749 667 SMART ANK_2a 18 47 IPR002110 GO:0005515
Cca09g01749 667 SMART ANK_2a 255 284 IPR002110 GO:0005515
Cca09g01749 667 SMART ANK_2a 289 329 IPR002110 GO:0005515
Cca09g01749 667 SMART ANK_2a 100 129 IPR002110 GO:0005515
Cca09g01749 667 SMART ANK_2a 188 217 IPR002110 GO:0005515
Cca09g01749 667 SMART ANK_2a 222 251 IPR002110 GO:0005515
Cca09g01749 667 SMART ANK_2a 134 164 IPR002110 GO:0005515
Cca09g01749 667 SMART ANK_2a 337 368 IPR002110 GO:0005515
Cca09g01749 667 MobiDBLite consensus disorder prediction 594 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01749 Cca-Chr9 42032433 42036179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01749 194 378 Miscellaneous Gene Families AT2G31820 34.759 1.81e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01749 - - gmx:100791999 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00112 01 1106520 1110050 Cca09g01749 09 42032433 42036179 PCT