Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00112 ATGTGTCCGTCGTATTTGCCTCTGCGGTGGGAGAGCACGGGGGAGCAATGGTGGTACGCCACTCCGATCGACTGCGCCGCCGCGAACGGCCACTACGATCTGGTGGTGGAGCTTCTCCACCTCGACGCCAACCTCCTCACAAAGCTCACCTCCCTCCGCAGAATCCGCCGCCTCGAGACCGTCTGGGACGACCAGGCACGTGTGGCGAAGCACCGCTCGCACGTGGCGAGAAGCCTCATGCTCGAGTGCGAGGCCGAGAACGGACGCAACTCCCTCATCCGCGCCGGCTACGGCGGCTGGCTCCTCTACACCGCGGCGTCGGCCGGCGACGCCGATTTCGTGCGGGAGCTGCTGGGGAAGCGCCCGGCGCTGGTGTTCGGGGAAGGCGAGTACGGCGTGACGGATATTCTTTACGGTGCGGCGAGGAGCAATGTGTGCGAGGTGTTTGAGATTCTGCTGCGTTGCGCTCTCTCGCCGAGGGAGGGAGCGGCGGTGGATGGGGTTTTCCAGAGGGATATGGTGAACAGAGCGGCTCATGCTGCTGCCAGAGGAGGGAACTGGGAGATGCTCAAGAAGATTCTGGAAGAACAACATTCTCCTCTTTTGGAGTTTAGAGATGCCAATGGATGCACCGTGTTGCATAGTGCTGCTGGTAGAGGGCAGGTTCAGGTGGTGAGAAATCTACTTGCATCATTTGATGTTGTAAATTTAACAGATGCTCAAGGGAACACCGCATTGCATGTAGCTTCTTACGGGGGTCACTTGCCTGTGGTTGAGATCCTAATTCTTGCATCACCCTCACTGGCATTGTTAACCAATCACTATGGAGATACTTTTCTTCATATGGCAGTGGCTGGTTTCAGATGTCCTGGTTTCCGCAGACTGGACAAGCATATTGAGCTCATGAAGCTATTGGTAAGTGGAAAGATTGTGAACTTACAGGACATTATCAATGTAAAGAACAACGATGGAAGAACGGCTCTACATGTATCCGTGATGGATAATATCCAGTGTGAGCTAGTGGAATTGTTGATGTCTGTGCCATCAATTGATTTGAACATTTGTGATGTTGATGGGATGACCCCTTTGGATCTTCTAAAACAAAAACCACGATCAGCATCTTCTGATATTTTAATCAAGAGGATAATTTCCTCTGGAGGGGTCTCTAGTTGTAAGGATGCTGTAGCAGGAAATGCCTTTTGTAATAATCACAAAGGTTATGTCATTGGAGGCAGTCCTGGGACTTCATTCAGAATACCAGATGCAGAGATATTCTTGTACACTGCCATTGAGAATTCATCAGATGCCAATTATGAATATGATCAAGCAAGTGTGGAATCACATTCTTGCTCCAACGAACTAAGCAATTCTGACTCACCCAATTCCCCACGTATCAAGAAGTCTAGTTCTGTCAATTATGCTTCAAGGCCATCAAAATTTCGCCTCAAGTGGGCCAGAAGAAGAGATACAAGATCAACTGCTTCAGAATTGGAAGATGATCATTCTCTTGATCCTTTTAGTTCAAGTAGAAACTTGGAAGAGTTTCCAATCCCATTAAGGCAAAGATACTCACAACCATGTTCCCTTCCAAACAACAAGAGAACATCTCTTCCAAGTCCATCCTCCAAAGTTAAATTCACTTCAGGCGTGACGCAAGGTGTGATTCAGCTAAAGCCACATCCTAGTCCTTTCCAAGAACTATCTGTGGCTTCTCTTTCTTCCATCAAGAAAGAAAAGGGTGCTGATATAATGGGACCCTCTTCCTCTAACCGATCAATAGATGATGGCACACTTCTATTGAACTACAAACAGTGTTCCTTCAATAAGAAATTGATGAATGGATATTTTTCTTTTGGAGCACAAGGCCTGGCTGTTGAAGATTCCAATAGCTGCGCAAAGTCAAATAGGAGTTACAAGCGTTTAAGTTCCTTAGTTGCATAA 1941 0.4817 MCPSYLPLRWESTGEQWWYATPIDCAAANGHYDLVVELLHLDANLLTKLTSLRRIRRLETVWDDQARVAKHRSHVARSLMLECEAENGRNSLIRAGYGGWLLYTAASAGDADFVRELLGKRPALVFGEGEYGVTDILYGAARSNVCEVFEILLRCALSPREGAAVDGVFQRDMVNRAAHAAARGGNWEMLKKILEEQHSPLLEFRDANGCTVLHSAAGRGQVQVVRNLLASFDVVNLTDAQGNTALHVASYGGHLPVVEILILASPSLALLTNHYGDTFLHMAVAGFRCPGFRRLDKHIELMKLLVSGKIVNLQDIINVKNNDGRTALHVSVMDNIQCELVELLMSVPSIDLNICDVDGMTPLDLLKQKPRSASSDILIKRIISSGGVSSCKDAVAGNAFCNNHKGYVIGGSPGTSFRIPDAEIFLYTAIENSSDANYEYDQASVESHSCSNELSNSDSPNSPRIKKSSSVNYASRPSKFRLKWARRRDTRSTASELEDDHSLDPFSSSRNLEEFPIPLRQRYSQPCSLPNNKRTSLPSPSSKVKFTSGVTQGVIQLKPHPSPFQELSVASLSSIKKEKGADIMGPSSSNRSIDDGTLLLNYKQCSFNKKLMNGYFSFGAQGLAVEDSNSCAKSNRSYKRLSSLVA 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00112 646 ProSiteProfiles Ankyrin repeat profile. 208 240 IPR002110 GO:0005515
Cca01g00112 646 MobiDBLite consensus disorder prediction 485 510 - -
Cca01g00112 646 Gene3D - 11 393 IPR036770 -
Cca01g00112 646 SMART ANK_2a 18 47 IPR002110 GO:0005515
Cca01g00112 646 SMART ANK_2a 208 237 IPR002110 GO:0005515
Cca01g00112 646 SMART ANK_2a 275 315 IPR002110 GO:0005515
Cca01g00112 646 SMART ANK_2a 97 126 IPR002110 GO:0005515
Cca01g00112 646 SMART ANK_2a 173 202 IPR002110 GO:0005515
Cca01g00112 646 SMART ANK_2a 241 270 IPR002110 GO:0005515
Cca01g00112 646 SMART ANK_2a 323 354 IPR002110 GO:0005515
Cca01g00112 646 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 1 642 - -
Cca01g00112 646 ProSiteProfiles Ankyrin repeat region circular profile. 241 262 - -
Cca01g00112 646 ProSiteProfiles Ankyrin repeat profile. 241 273 IPR002110 GO:0005515
Cca01g00112 646 MobiDBLite consensus disorder prediction 449 473 - -
Cca01g00112 646 MobiDBLite consensus disorder prediction 523 543 - -
Cca01g00112 646 MobiDBLite consensus disorder prediction 487 507 - -
Cca01g00112 646 SUPERFAMILY Ankyrin repeat 21 379 IPR036770 -
Cca01g00112 646 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 1 642 - -
Cca01g00112 646 MobiDBLite consensus disorder prediction 524 543 - -
Cca01g00112 646 Pfam Ankyrin repeats (3 copies) 179 262 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00112 Cca-Chr1 1106520 1110050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00112 101 364 Miscellaneous Gene Families AT1G07710 30.627 4.41e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00112 - - gmx:100796359 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00112 01 1106520 1110050 Cca09g01749 09 42032433 42036179 PCT