Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01380 ATGGCGGTGGAGTACACATGCTGCGAAACCGGCTTCTTCCTCCACATACTCGTCATCGTGCTGCTCGTGCTCTTCGCGGGCCTCATGTCGGGCCTCACTTTGGGCCTCATGTCGCTCAGCCTCGTTGATCTTGAAGTTCTCGCCAAGTCCGGTACTCCTCAGGATCGTAAGCACGCTGAGAAGATATTACCTGTTGTCAAAAACCAACATTTGTTGCTTTGTACTCTGCTAATTTGCAATGCTGCAGCCATGGAGGCACTTCCTATATTTCTTGATGGTCTCGTTACCGCATGGGGCGCCATCCTGATTTCGGTGACATTAATTCTTTTGTTCGGTGAGATTATACCCCAATCAGTTTGTTCTCGGTATGGTTTGGCGATTGGTGCATCAGTGGCTCCCTTTGTTCGTGTGCTTGTATGCATATGTTTTCCGGTTGCTTTCCCAATTAGTAAGTTGTTGGATTTTTTACTGGGCCATCGACATGAAGCCCTGTTCCGTAGAGCTGAGTTGAAAACACTAGTAGATCTGCATGGTAATGAGGCTGGAAAAGGAGGGGAACTGACACATGATGAAACAACAATCATTGCTGGGGCACTTGAACTCAGCGAGAAGACAGCCAGTGATGCCATGACTCCAATATCTGAAACATTTGCCATTGATATTAATTCAAAGCTTGACAGGGAATTGATGAATGAAATATTGGAGAATGGGCATAGTAGAGTCCCAGTCTATTACGAGCACTCTACAAACATTATTGGACTTATACTGGTCAAGAATTTATTGACAGTTCATCCAGAAGATGAAGCACCCGTGAAGAGTGTAACCATACGCAGGGTTCCAAGGGTTCCTGAAAGTATGCCACTTTATGACATTTTGAATGAGTTCCAGAAGGGCCATAGCCACATGGCAGTTGTTGTAAGGCGGTGTGACAAGACGAAACAACAATCTCCCCAAAATAATGGAAATGACTCGCTGAGAGATGTGAAGGTGGATATTAATGGTGAAAAGCCTCCTCAAGAGAAAGCTTTGAAACCCAAGATGCCACTCCATAAGTGGAAAAGCTTTCCAAATACGAACAAGTCAAATAGGGGTGGTTCTCGGAGCAGAAAATGGTCAAAAAATATGTACTCGGATATTTTGGAGATAGATGGAAGTCCCCTTCCAAAGCTCCCTGAAGAGGAAGAAGCCGTTGGAATTATTACGATGGAAGATGTCATTGAAGAGCTTTTACAGGAGGAGATCTTTGATGAGACAGATCATCATTTTGAAGACTCATGA 1278 0.446 MAVEYTCCETGFFLHILVIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAEKILPVVKNQHLLLCTLLICNAAAMEALPIFLDGLVTAWGAILISVTLILLFGEIIPQSVCSRYGLAIGASVAPFVRVLVCICFPVAFPISKLLDFLLGHRHEALFRRAELKTLVDLHGNEAGKGGELTHDETTIIAGALELSEKTASDAMTPISETFAIDINSKLDRELMNEILENGHSRVPVYYEHSTNIIGLILVKNLLTVHPEDEAPVKSVTIRRVPRVPESMPLYDILNEFQKGHSHMAVVVRRCDKTKQQSPQNNGNDSLRDVKVDINGEKPPQEKALKPKMPLHKWKSFPNTNKSNRGGSRSRKWSKNMYSDILEIDGSPLPKLPEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01380 425 Pfam Cyclin M transmembrane N-terminal domain 17 190 IPR002550 -
Cca09g01380 425 ProSiteProfiles CBS domain profile. 210 271 IPR000644 -
Cca09g01380 425 MobiDBLite consensus disorder prediction 311 326 - -
Cca09g01380 425 Gene3D - 381 417 IPR046342 -
Cca09g01380 425 MobiDBLite consensus disorder prediction 311 330 - -
Cca09g01380 425 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 1 425 - -
Cca09g01380 425 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Cca09g01380 425 SUPERFAMILY CBS-domain pair 194 411 IPR046342 -
Cca09g01380 425 MobiDBLite consensus disorder prediction 354 370 - -
Cca09g01380 425 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Cca09g01380 425 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 425 IPR045095 GO:0010960
Cca09g01380 425 MobiDBLite consensus disorder prediction 335 370 - -
Cca09g01380 425 Gene3D - 191 328 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01380 Cca-Chr9 37031898 37038646 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01380 K16302 - gmx:100801937 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01380 09 37031898 37038646 Cca09g01380 09 37031898 37038646 ECH
Cca09g01380 09 37031898 37038646 Cca08g02596 08 60307075 60311297 PCT