Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02596 ATGGCTGTGAAGTATGAATGTTGTAATGTGGAGTTTTGGAAACGCATACTGATAATTCAGGTGCTTGTTATGTTCGCTGGTTTCATGTCAGGACTCACTTTAGGACTCATGTCATTGAGTCTCGTTGATCTTGAGGTCCTCGCTAAGTCTGGCACTCCTAGAGATCGTCATCATGCTTCGAAGATATTGCCTGTTGTCAGAAATCAACATTTATTGCTTTGCACCCTCCTAATTTGCAATGCAATAGCCATGGAGGCACTTCCAGTTTTCCTTGATAGTCTGGTCGTTTGGTGGGGTGCCATCCTAATATCGGTGACATTAATTCTTCTGTTTGGTGAGATTATACCCCAGTCAATTTGTTCTCGGCATGGTTTAGCAATTGGTGCAACAGTGGCTCCAGTTGTCCGTGTTCTTGTATGGATCTGTTTTCCTGTTGCTTATCCAATTAGTAAGCTGTTGGACTTTTTGCTAGGGCATCGACATGAAGCCCTTTTCCACCGAGCTGAGTTGAAAACACTTGTAAACCTGCATGGCCATGAGGCTGGAAAAGGTGGGGAACTGACACATCATGAAACAACAATCATTGCTGGAGCATTGGAACTTGCTGAGAAAATAGCCAGTGATGCCATGACTCACATAACCGAAACATTTTGTATTGATATTAATTCAAAGCTTGATAGCAGGGATCTGATGAACCTAATATTGAAGAATGGGCATAGCAGAGTCCCTGTCTATCATGATCAGCCTTCAAATATTATTGGACTTATCCTGGTCAAGAATTTATTGACAATTGACCTAGAGAATGAAGCACCCGTGAAAAGTGTGACCATACGCAGAATTCCAAGGGTACCAGAAACGATGCCACTGTACGATATTTTGAATGAGTTTCAGAAGGGCCATAGCCACATGGCTGTTGTTATCAGACATTGTGACAAGACAGGGCAGCAATCTTCCAACAATAATTCCTATGAGTCAGCAAGAGATGTGAAGGTGGATATTGATGGTGAGAACACACCCCGACAGGAAAAATTGAAAACCAAGATGTCATTCCATTTATGGAAAAGTTTTCAAAACGCAAATAACTGTAAGAGGGGTGGTTCTCAGAGCAGAAAATGGTCAAAGAATATGTACTCTGATATTTTGGAAATAGATGAAAATTCAATTCCAAAGCTGCCCGAAAAAGAAGAAGCTGTTGGCATAATTACTATGGAAGATGTCATTGAAGAGCTTCTACAGGGGGAGATCTTTGATGAGACGGATCATCATTTTGAACACTCGTGA 1281 0.4153 MAVKYECCNVEFWKRILIIQVLVMFAGFMSGLTLGLMSLSLVDLEVLAKSGTPRDRHHASKILPVVRNQHLLLCTLLICNAIAMEALPVFLDSLVVWWGAILISVTLILLFGEIIPQSICSRHGLAIGATVAPVVRVLVWICFPVAYPISKLLDFLLGHRHEALFHRAELKTLVNLHGHEAGKGGELTHHETTIIAGALELAEKIASDAMTHITETFCIDINSKLDSRDLMNLILKNGHSRVPVYHDQPSNIIGLILVKNLLTIDLENEAPVKSVTIRRIPRVPETMPLYDILNEFQKGHSHMAVVIRHCDKTGQQSSNNNSYESARDVKVDIDGENTPRQEKLKTKMSFHLWKSFQNANNCKRGGSQSRKWSKNMYSDILEIDENSIPKLPEKEEAVGIITMEDVIEELLQGEIFDETDHHFEHS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02596 426 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Cca08g02596 426 CDD CBS_pair_CorC_HlyC_assoc 206 307 IPR044751 -
Cca08g02596 426 Gene3D - 373 418 IPR046342 -
Cca08g02596 426 ProSiteProfiles CBS domain profile. 210 272 IPR000644 -
Cca08g02596 426 SUPERFAMILY CBS-domain pair 194 412 IPR046342 -
Cca08g02596 426 Gene3D - 191 326 IPR046342 -
Cca08g02596 426 Pfam Cyclin M transmembrane N-terminal domain 17 185 IPR002550 -
Cca08g02596 426 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 1 426 - -
Cca08g02596 426 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 426 IPR045095 GO:0010960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02596 Cca-Chr8 60307075 60311297 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02596 K16302 - gmx:100799797 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01380 09 37031898 37038646 Cca08g02596 08 60307075 60311297 PCT