Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01371 ATGAAGTTCTCAAATCTTGTGTTGATCTTCATCGTTTTCTCCATGTGTAACATTTCCTTGGCCCAAAATTCTCCGAAGGATTACCTCGACGCGCACAACAAGGCTCGCGCGGAGGTTGGTGTTCCACCACTAAAATGGAACAAAACCCTTGAAGCATATGCTCAGAAGTATGCAGATTCAAAGATCAAAACTTGCGAAATGGAGCACTCTTACGGGCCCTATGGGGAGAACCTAGCTGAGGGTTATGGCGAATTATTGGGTACGGATGCAGTGAAAATGTGGGTTTCAGAGAAGCCATTTTATGATGTTAAATCCAACAAATGTGTCAAGGACGAGTGCTTGCATTATACTCAGGTCGTTGCAAGAAAAAGCACTCATCTTGGATGTGCTAGGTCTAAGTGTGACAATGGGTGGATTTTTGTCATTTGCAGCTATGACCCAGTAGGCAATATTGTAGGCCAACGACCTTTCTAG 474 0.4409 MKFSNLVLIFIVFSMCNISLAQNSPKDYLDAHNKARAEVGVPPLKWNKTLEAYAQKYADSKIKTCEMEHSYGPYGENLAEGYGELLGTDAVKMWVSEKPFYDVKSNKCVKDECLHYTQVVARKSTHLGCARSKCDNGWIFVICSYDPVGNIVGQRPF 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01371 157 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 11 157 IPR001283 -
Cca09g01371 157 Pfam Cysteine-rich secretory protein family 29 145 IPR014044 -
Cca09g01371 157 Gene3D CAP 22 157 IPR035940 -
Cca09g01371 157 SUPERFAMILY PR-1-like 7 157 IPR035940 -
Cca09g01371 157 CDD CAP_PR-1 25 157 - -
Cca09g01371 157 PRINTS Allergen V5/Tpx-1 family signature 44 62 IPR001283 -
Cca09g01371 157 PRINTS Allergen V5/Tpx-1 family signature 90 103 IPR001283 -
Cca09g01371 157 PRINTS Allergen V5/Tpx-1 family signature 113 129 IPR001283 -
Cca09g01371 157 PRINTS Allergen V5/Tpx-1 family signature 140 153 IPR001283 -
Cca09g01371 157 PANTHER BASIC FORM OF PATHOGENESIS-RELATED PROTEIN 1-LIKE 11 157 - -
Cca09g01371 157 SMART SCP_3 23 153 IPR014044 -
Cca09g01371 157 ProSitePatterns CRISP family signature 2. 140 151 IPR018244 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01371 Cca-Chr9 36918722 36919501 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01371 K13449 - gmx:100527778 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01371 09 36918722 36919501 Cca09g01371 09 36918722 36919501 ECH
Cca09g01371 09 36918722 36919501 Cca08g02592 08 60274063 60274563 PCT