Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02592 ATGGGGTTGTGCAAGGTTTCATTGTCTCTATTTTATGTGTTGGGGTTAGTGATGGTTGGTCATGTGGCCTACGCCCAAGACTCAGAAGAAGACTACGTGAATGCACACAACGTTGCAAGGGCACAAGTGGTTGTTGAAAACTTGGGTTGGGATGATACCGTCGCAGCTTTTGCACAAAACTACGCTAATCAACGGCAACGCAAAGGTGATTGCCAACTGATCCACTCGGGTGGCGGTGGAAAATACGGAGAGAATATTGCTATGAGCACTGGTGACCTAAGTGGCGTAGAGGCAGTGAAAATGTGGGTCGATGAGAAACCCTACTATGACTACTATTCTAACTCTTGTGTTTACGGTCAGCAGTGTCTGCATTACACTCAGGTTGTTTGGAGAAACTCTGTACGCATTGGATGTGCCAAAGTAAGATGTGATAATGGAGGCACTTTCATCACTTGCAACTATTCTCCCCCTGGCAACTATATACGTGAAAGACCCTACTAG 501 0.4611 MGLCKVSLSLFYVLGLVMVGHVAYAQDSEEDYVNAHNVARAQVVVENLGWDDTVAAFAQNYANQRQRKGDCQLIHSGGGGKYGENIAMSTGDLSGVEAVKMWVDEKPYYDYYSNSCVYGQQCLHYTQVVWRNSVRIGCAKVRCDNGGTFITCNYSPPGNYIRERPY 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02592 166 ProSitePatterns CRISP family signature 2. 149 160 IPR018244 GO:0005576
Cca08g02592 166 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Cca08g02592 166 PRINTS Allergen V5/Tpx-1 family signature 98 111 IPR001283 -
Cca08g02592 166 PRINTS Allergen V5/Tpx-1 family signature 122 138 IPR001283 -
Cca08g02592 166 PRINTS Allergen V5/Tpx-1 family signature 149 162 IPR001283 -
Cca08g02592 166 Pfam Cysteine-rich secretory protein family 33 154 IPR014044 -
Cca08g02592 166 Gene3D CAP 26 166 IPR035940 -
Cca08g02592 166 CDD CAP_PR-1 30 166 - -
Cca08g02592 166 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 1 166 IPR001283 -
Cca08g02592 166 PANTHER PATHOGENESIS-RELATED PROTEIN 1B-LIKE 1 166 - -
Cca08g02592 166 SMART SCP_3 27 162 IPR014044 -
Cca08g02592 166 SUPERFAMILY PR-1-like 25 166 IPR035940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02592 Cca-Chr8 60274063 60274563 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02592 K13449 - gmx:100805116 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01371 09 36918722 36919501 Cca08g02592 08 60274063 60274563 PCT