Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01243 ATGCACCAGGGTTATCCAACTGAAACGTTAATACGGTTTCTCAAAGCAAGGGATTGGAATGTTGCCAAAGCCCATAAAATGTTAATTGATTGTTTGAAGTGGAGAGTGGAAAATGAGATTGACAAAGTTTTAGTGAAGCCTATCCCTGCAGATTTGTACAGAGCTATACGGGATTCTCAACTCATGGGAATGTCTGGTTACTCAAAGGAGGGTCTACCAGTCGTTGCTGTTGGTGTTGGGCTCAGTACATATGATAAAGCATCTGACAAATACTATATACAATCACACATCCAAATGAATGAATATAGAGATCGAGTGGTCTTGCCAAAAGCTACAAAAAAGCATGGACGATACATCGGCACCTGTTTGAAAGTCTTGGATATGACTGGTTTAAAATTTTCAGCACTGAACCAATTGAGGTTGTTGACAGCTATATCTACAATAGATGACTTGAACTACCCAGAAAAGACAGACACATACTATATTGTTAATGCACCATATATATTCTCAGCATGTTGGAAGGTTGTAAAGCCTCTTTTACAAGAAAGAACAAGGAGGAAAATCCAGGTGCTGCAAGGTTGTGGGAAGGAAGAATTATTGAAGGTAATGGATTATGCATCCCTCCCACACTTCTGCAGAAAAGAAGATTCCAAGTCATCCAAACACAATGCATCTGGAAACACTGAGAATTGTTTCTCCTTCAATCATGTCTTCCATCAACAACTCTACAATCACATCAAGCAGCAAGCTATCATTATGGAGTCAATCTCACCAATCAGACAAGGGTCCTTCTATGTAGACATACCAGAGCCAGACCCTGATGATGCCAAAATAGCCAAAACCATAGAAACCGAGTTGCACAAATTGGAGAATCATAATGGCTTTAACAACTCATTGAATGGTGTTGCAGTTAATGGCCATTGA 924 0.3972 MHQGYPTETLIRFLKARDWNVAKAHKMLIDCLKWRVENEIDKVLVKPIPADLYRAIRDSQLMGMSGYSKEGLPVVAVGVGLSTYDKASDKYYIQSHIQMNEYRDRVVLPKATKKHGRYIGTCLKVLDMTGLKFSALNQLRLLTAISTIDDLNYPEKTDTYYIVNAPYIFSACWKVVKPLLQERTRRKIQVLQGCGKEELLKVMDYASLPHFCRKEDSKSSKHNASGNTENCFSFNHVFHQQLYNHIKQQAIIMESISPIRQGSFYVDIPEPDPDDAKIAKTIETELHKLENHNGFNNSLNGVAVNGH 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01243 307 PANTHER - 1 306 - -
Cca09g01243 307 PANTHER OS09G0258000 PROTEIN 1 306 - -
Cca09g01243 307 SUPERFAMILY CRAL/TRIO domain 51 211 IPR036865 -
Cca09g01243 307 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 49 220 IPR001251 -
Cca09g01243 307 SMART CRAL_TRIO_N_2 6 31 IPR011074 -
Cca09g01243 307 Pfam CRAL/TRIO, N-terminal domain 5 30 IPR011074 -
Cca09g01243 307 Pfam CRAL/TRIO domain 60 211 IPR001251 -
Cca09g01243 307 SUPERFAMILY CRAL/TRIO N-terminal domain 4 46 IPR036273 -
Cca09g01243 307 CDD SEC14 53 211 IPR001251 -
Cca09g01243 307 Gene3D - 2 253 IPR036865 -
Cca09g01243 307 SMART sec14_4 56 217 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01243 Cca-Chr9 34684772 34690429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01243 1 291 Acyl Lipid Metabolism Gene Families AT1G55840 70.205 3.74e-162 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01243 - - gmx:100817955 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01243 09 34684772 34690429 Cca09g01243 09 34684772 34690429 ECH
Cca09g01243 09 34684772 34690429 Cca05g02037 05 40139800 40143125 PCT