Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02037 ATGGGGATTAATAATCTAGAAGCTATCAAGCAGTTACAGTCCCTTATGGAAAACTTGGATGAGCAACAGAAGAAAACATTCCAGAATATGCACCAGGGCTATCCAACAGAAACATTAGAACGATTTCTCAAAGCAAGGGACGGGATTGTTGTCAAGGCACATAAAATGTTAGTTGATTGTTTACGATGGAGAGTGGAAAATGAGATTGACAATGTTTTAGCGAAACCTATACACCCTGATTTGTACAGACGTTTGCGAGATTCTCAACTTATAGGAATGTCTGGTTTCTCAAAGGAGGGCCTACCTGTCATTGCTGTTGGTGTTGGGCTCAGCACATTTGATGAAGTTTTTGACAAATACTATATACAGTCGCACATCCAAATGAATGAATACAGGGATCGAGTGATCTTGCTTTTGACTGCTATATCAACAGTAGATGACTTGAACTACCCAGAAAAGACAGACGCATATTATATTGTTAATGTTCCATATGTATTCTCAGCATGTTGGAAGGTTGTAAAGCCTCTTTTGCAAGAAAGAACAAGGAGGAAAGTCCACGTGCTGAAAGGTTGTGGCATGGAGGAATTGCTGAAGGTAATGGACTATGCATCCCTCCCACATTTTTGCAGAAAGGAGGATTCCAGGGTACCCCGACATCTTGTAGCTGAAAAAACCGAAAATTGTTTCTCAGTTAATCATGTCTTCCATAGACAACTCTACAATTACATCAACCAGCAAGCTATATTAATGGAGTCCACATCACCAATCAGACAGGATTCTTTCCATGTAGACTTACCAGAGCCAGACCCAGATGATGCCAAAATCGCCAAGACTATAGAAAATGAGTTCCACAAACTGGAAATTCAGAGTGGCCTTACCAACTAA 885 0.4045 MGINNLEAIKQLQSLMENLDEQQKKTFQNMHQGYPTETLERFLKARDGIVVKAHKMLVDCLRWRVENEIDNVLAKPIHPDLYRRLRDSQLIGMSGFSKEGLPVIAVGVGLSTFDEVFDKYYIQSHIQMNEYRDRVILLLTAISTVDDLNYPEKTDAYYIVNVPYVFSACWKVVKPLLQERTRRKVHVLKGCGMEELLKVMDYASLPHFCRKEDSRVPRHLVAEKTENCFSVNHVFHRQLYNYINQQAILMESTSPIRQDSFHVDLPEPDPDDAKIAKTIENEFHKLEIQSGLTN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02037 294 SMART sec14_4 85 214 IPR001251 -
Cca05g02037 294 PANTHER OS09G0258000 PROTEIN 137 294 - -
Cca05g02037 294 PANTHER OS09G0258000 PROTEIN 1 137 - -
Cca05g02037 294 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 97 206 IPR001251 -
Cca05g02037 294 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Cca05g02037 294 Gene3D - 136 228 IPR036865 -
Cca05g02037 294 Pfam CRAL/TRIO, N-terminal domain 8 59 IPR011074 -
Cca05g02037 294 PANTHER - 137 294 - -
Cca05g02037 294 PANTHER - 1 137 - -
Cca05g02037 294 Gene3D - 4 135 IPR036865 -
Cca05g02037 294 Coils Coil 5 29 - -
Cca05g02037 294 CDD SEC14 92 208 IPR001251 -
Cca05g02037 294 Pfam CRAL/TRIO domain 126 208 IPR001251 -
Cca05g02037 294 SUPERFAMILY CRAL/TRIO N-terminal domain 8 73 IPR036273 -
Cca05g02037 294 SUPERFAMILY CRAL/TRIO domain 80 208 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02037 Cca-Chr5 40139800 40143125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02037 1 293 Acyl Lipid Metabolism Gene Families AT5G47730 56.442 1.43e-130 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02037 - - gmx:100815791 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02037 05 40139800 40143125 Cca05g02037 05 40139800 40143125 ECH
Cca09g01243 09 34684772 34690429 Cca05g02037 05 40139800 40143125 PCT