Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01240 ATGATGGGTAGCACCGCCGACGCCTTGTCATCGTCGGATTTCTTCTGCCGCCGCCACGTGTTCCTCTGCTACAAGAACCCCGCCGTGTGGCCGCCGCGCATTGAGGCCGCCGAGTTTGATCGCCTCCCGAGGCTGCTCCACGCCGCCATCAATGCCAGGAAGCCTCACATCAAGAAAGAGACCTGCTTAACAATATGTGAGGGACATGATGGGACTGAAACATCAAATGGAGATGTATTGATCTTTCCAGACATGATCAGATATAGGAGATTAACCCATTTTGATGTTGAGACATTTGTTGAAGAAGTCCTTGTCAAGGAAGGAGAATGGCTTCCTGGAAACCCTGAATCCTTAAAAGCTTCATATGTTTTTGTGTGTTCACATGGATCCCGTGATCGTAGGTGTGGGGTTTTTGGACCTATCTTGGTCAGTAGATTCAGGGAAGAGATTGAGTTACATGGTCTTCAAGGAAAAGTGTTGATTAGCTCTTGCTCGCACATTGGGGGGCCTAAGTATGCAGGAAATGTCATTATATTTGGATCGAGCATCAACAGAGAAGTCACTGGACACTTGTATGGATATGTTAATCCTGATGATGTACCTTTATTGTTTCGCCAGCATATCATTAAAGGGGAAATTTTTGACTCACTATGGAGGGGTCAAATTGGTTTATCAGAAGATGAGCAGAAGAAAAAGCAAGAACAACGGCTTCAGCTGAATGGCGCAAGGCATTTAGAAGGAAGCACGGTTGCGAGCCGCTGTCGAACCGACGGAGAGAGCTGTTGCCAAGACAATGAAGACTCTTGTTGCTGTCAGAACAACATGTTAGCGGAAATGGGAGAGCTCTCGCCTGACAATAATAGCAGGAAGAATGTAAATGTGATTTCTCGGATCAACAAGGGCAAGGCAGCATTGCGCTGGTTTAGTTCCACGCCGACATGGCTTGACAGCTGGGAGCAGGAGGATACTTATGCTGCTCTTGCCGTTGTCTGTGCCGCCGTGTCGGTTACCATTGCTTATAGCTGCTACAAACAAATGAGATGA 1044 0.4741 MMGSTADALSSSDFFCRRHVFLCYKNPAVWPPRIEAAEFDRLPRLLHAAINARKPHIKKETCLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVETFVEEVLVKEGEWLPGNPESLKASYVFVCSHGSRDRRCGVFGPILVSRFREEIELHGLQGKVLISSCSHIGGPKYAGNVIIFGSSINREVTGHLYGYVNPDDVPLLFRQHIIKGEIFDSLWRGQIGLSEDEQKKKQEQRLQLNGARHLEGSTVASRCRTDGESCCQDNEDSCCCQNNMLAEMGELSPDNNSRKNVNVISRINKGKAALRWFSSTPTWLDSWEQEDTYAALAVVCAAVSVTIAYSCYKQMR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01240 347 CDD TRX_Fd_Sucrase 121 222 IPR009737 -
Cca09g01240 347 Pfam Sucrase/ferredoxin-like 17 220 IPR009737 -
Cca09g01240 347 PANTHER ACTIN PATCHES DISTAL PROTEIN 1 15 346 IPR009737 -
Cca09g01240 347 PANTHER SUCRASE-LIKE PROTEIN 15 346 - -
Cca09g01240 347 SUPERFAMILY Thioredoxin-like 122 224 IPR036249 -
Cca09g01240 347 Gene3D Glutaredoxin 120 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01240 Cca-Chr9 34635729 34640524 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01240 - - gmx:100788716 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01240 09 34635729 34640524 Cca09g01240 09 34635729 34640524 ECH
Cca09g01240 09 34635729 34640524 Cca05g02036 05 40136413 40139374 PCT