Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02036 ATGGCGAGTAACAGAGAGAGAGATGAGTCTCTTACATTCACAATCCCTTCTTCCTCTTCTCATTCTTCCCCCATCACCGTCTCCGACCAACTCGACAGTTACCTCGCCGACCCCAGAAGCGCCTCCGGAAGCTTCCAGAACGACGGCCTCCTCTCCGCCGGTGACGCCGCCGCCGCTGATCCCGACTTCGGATTCTACCGTCCTGATTTCCGTCAGAACCCCCTCTCCGGCTccgtcgagttctaccaacgccacgtcttcctctgttataagaaccctcgcgtctggccaccgcgaatagaagcggcagagttcgatcgcttgccgaggttgctctacgccgccgttgtcgcaagaaagaGTCAGATGAAGAAGGAGactcggttaacgatatgtgagggtcatgatggaactgagacatctaatggggatgtgttgatctttcctgacatggttagatacagGAGGTTAACGCATTTTGATGTTGAGACGTTTGTGGAAGAGGTTCTTGTGAAGGATGGGGAGTGGCTTCCCGGAACCCCTGAGGCTTTGAGAGGTTCTTATATTTTTGTGTGTTCACATGGATCCCGTGATCGCAGATGCGGGGTTTGTGGACCTGTCTTGGTCAGTAGATTCAGGGAGGAAATAGAGTTGCATGGTCTTCAAGGTAAAGTGTTTGTAAGCCCGTGTTCACACATTGGGGGAAGTCAGTATGCAGGAAACGTCATTGTGTTTGGACCTAGCATGAATGGAGAAGTCACTGGGCACTGGTATGGTTATGTTACCCCGGATGATGTACCTTTATTGCTTCAACATCATATCGTAAAAGGGGAGATCTTAGATTCACTATGGAGGGGTCAGATGGGTTTATCAGTGGACGAACAGCAGAAAAAGCATGAACAGAGGCTTCTGCTGAATGGCTTAAGAGATTTAGAAGAAAGCACTCAAGTGTGTAGGCCTCAAGACAATTTTGTGAGCTGCCAATCAATTGGAGTGAACTGCTGCCAATCAAATGAAGTTGTCTGTTGCCAATCAAATGGAGACCCTTCTTTCCGTCAGAATCATGTGTTAGTGGAAAAGAGAAAGGACCCTGATGTCATTGAGACACAGGCAAAACTCTCAGCTGATAATAAGAGCAGTGAAACTGTGATTTCTCGGATCAGTAGTGGCAAAGGAGCTTCGCGCAAGTTTCCATCCATGACTACTTGGCTTGATTGGGAGCAGGAAGATACTTATGCAGCCCTTGCTGTTGGAAACCAGTGGAGCTCAATCTTTAATCTGGATGTGTGCGCTTTATTGCATGTGCTTGCAGAGTATTATTATTTAATGGTGACAACAGTCATGGATGGGACTTATGAAGATGAAACACTTGATATAAAAGAATGCAGCATGTCCAGAGTCTTTTACCCTTGTTGGGAACAGAAAATTAAACCATATAGAACATGA 1446 0.397 MASNRERDESLTFTIPSSSSHSSPITVSDQLDSYLADPRSASGSFQNDGLLSAGDAAAADPDFGFYRPDFRQNPLSGSVEFYQRHVFLCYKNPRVWPPRIEAAEFDRLPRLLYAAVVARKSQMKKETRLTICEGHDGTETSNGDVLIFPDMVRYRRLTHFDVETFVEEVLVKDGEWLPGTPEALRGSYIFVCSHGSRDRRCGVCGPVLVSRFREEIELHGLQGKVFVSPCSHIGGSQYAGNVIVFGPSMNGEVTGHWYGYVTPDDVPLLLQHHIVKGEILDSLWRGQMGLSVDEQQKKHEQRLLLNGLRDLEESTQVCRPQDNFVSCQSIGVNCCQSNEVVCCQSNGDPSFRQNHVLVEKRKDPDVIETQAKLSADNKSSETVISRISSGKGASRKFPSMTTWLDWEQEDTYAALAVGNQWSSIFNLDVCALLHVLAEYYYLMVTTVMDGTYEDETLDIKECSMSRVFYPCWEQKIKPYRT 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02036 481 CDD TRX_Fd_Sucrase 186 288 IPR009737 -
Cca05g02036 481 Gene3D Glutaredoxin 186 286 - -
Cca05g02036 481 PANTHER SUCRASE-LIKE PROTEIN 60 419 - -
Cca05g02036 481 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g02036 481 Pfam Sucrase/ferredoxin-like 75 286 IPR009737 -
Cca05g02036 481 PANTHER ACTIN PATCHES DISTAL PROTEIN 1 60 419 IPR009737 -
Cca05g02036 481 SUPERFAMILY Thioredoxin-like 188 290 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02036 Cca-Chr5 40136413 40139374 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02036 - - gmx:100816329 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02036 05 40136413 40139374 Cca05g02036 05 40136413 40139374 ECH
Cca09g01240 09 34635729 34640524 Cca05g02036 05 40136413 40139374 PCT