Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01239 ATGACAGAACTTGATGCTGCAAAGCAAGAACTGAGCAAGACTCGGCAAGAGTATGATTCTTCCTTGGTCGTAAAAGAGTCTGCTTTCAAGCAAGCAGCAGAAGCTGGAGAAGGAATGAAGGAAAACACAGAAAGAGCATCTGAGCTTTCAAAAGAGATTTCATCTTTAAAGGAGTCAATTGAGCAAGCGAAGCTTGCATCTATTGTAGCACAGCAACAGCAAGCAATGATTGTAGCTGAGAAAGATGTTCTAAGACAATCATATAAAGCTACCCTGGAACAATCTGAAAAGAGATTGCTTGCTTTAAAGAAGGAATTTAATCCTGAGCTTGCCAAAAATCTTGAAATGCAGCTGGCTGAGACAATGAGTGAAATTGGCGCTCTGCAAAAGGAAATGGAAAATAAAAGAACTTCAGACTTGGACTCAGTGAAAAGTGTCACTTTGGAGCTTGACGATGCTAAGGAATCACTGCAAAAAGTAGCAGATGAGGAAAGTTCTCTTAGAAGCTTGGTGGAATCTCTTAAGGTGGAACTAGAGAATGTAAAGAGAGAACATTCTGAATTGAAGGAGAAGGAATCTGAAACTGAATCAATTGTTGGGAATCTGCACGTCAAGCTCCGCAAAAGCAAGTCTGAGCTTGAAGTCTGCATGGCAGAAGAATCTAAAGTTAGAGGTGCATCCGAGGAAATGATCTTGACACTTAGCCAGCTGACATCTGAAACTGAAAATGCAAGGCGGGAAGCAGAAGATATGAAGAACAAAACTGCAGAATTGAAGAAAGAAGCTGAAGTGACCATGCTTGCATTAGAAGAAGCAGAGAAAAAGCTTAAAGTGGCACTGGAAGAAGCAGAAGCAGCAAAGGCAGCCGAGGCAAGTGCCCTTCACCGGATTACGGAGTTAACGGAAAGGACTACTGCTGCACGTGCCTCAACATCTGAATCTGGTGCTGTGATTACAATCTCAAAGGAGGAGTTTAACTCTCTAAGCCATAAAGTTGAGGAGTCTGATAAGTTAGCAGACATGAAAGTGGCTGCTGCCAAGGCACAGGTTGAGGCTGTGAAGGCTAGTGAAAATGAGGCTCTCAAAAGGTTGGAGACAACTCAGAAGGAGATTGAGGATATAAAATCTGCAACACAGGAGGCTTTGAAAAAGGCTGAAATGGCTGAAGCTGCAAAAAGGGTAGTTGAGAGTGAGCTCCGAAGATGGCGAGAGAGGGAGCAGAAGAAGGCAGCAGAAGCTGCTTCTCGAATTCTGGCCGAAACCCAGGTGTCAACAGAACCATCTCCTCAACACTATAGGATTCAAAAGCAGAATCCTCCACGTACAGCAGTGGAGGTGAGAAAGCTTGAAAAGGAGGTTTCAGTTTCAAAGAAAGCCCTCTTGCCTAATATTAGTGGCATCTTTCATAGGAAGAAGAACCAGGTTGAGGGTGGTTCTCCTTCTTATCTTCCTGGTGAGAACCCTGTATGA 1470 0.4361 MTELDAAKQELSKTRQEYDSSLVVKESAFKQAAEAGEGMKENTERASELSKEISSLKESIEQAKLASIVAQQQQAMIVAEKDVLRQSYKATLEQSEKRLLALKKEFNPELAKNLEMQLAETMSEIGALQKEMENKRTSDLDSVKSVTLELDDAKESLQKVADEESSLRSLVESLKVELENVKREHSELKEKESETESIVGNLHVKLRKSKSELEVCMAEESKVRGASEEMILTLSQLTSETENARREAEDMKNKTAELKKEAEVTMLALEEAEKKLKVALEEAEAAKAAEASALHRITELTERTTAARASTSESGAVITISKEEFNSLSHKVEESDKLADMKVAAAKAQVEAVKASENEALKRLETTQKEIEDIKSATQEALKKAEMAEAAKRVVESELRRWREREQKKAAEAASRILAETQVSTEPSPQHYRIQKQNPPRTAVEVRKLEKEVSVSKKALLPNISGIFHRKKNQVEGGSPSYLPGENPV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01239 489 Coils Coil 85 105 - -
Cca09g01239 489 Coils Coil 111 138 - -
Cca09g01239 489 Coils Coil 143 198 - -
Cca09g01239 489 MobiDBLite consensus disorder prediction 413 443 - -
Cca09g01239 489 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED 2 466 - -
Cca09g01239 489 Pfam Weak chloroplast movement under blue light 2 408 IPR008545 -
Cca09g01239 489 Coils Coil 347 405 - -
Cca09g01239 489 Coils Coil 234 289 - -
Cca09g01239 489 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 2 466 - -
Cca09g01239 489 Coils Coil 39 66 - -
Cca09g01239 489 MobiDBLite consensus disorder prediction 418 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01239 Cca-Chr9 34616538 34621628 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01239 - - gmx:100794569 711.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01239 09 34616538 34621628 Cca09g01239 09 34616538 34621628 ECH
Cca09g01239 09 34616538 34621628 Cca05g02035 05 40131316 40134648 PCT