Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02035 ATGGTGGCTAAAATCAGGCAAAGTGTTGTTAACTCTCCAAATCCAACAAAACCAGTGGTTGGAGAGATTGACACCAGTCCACCTATTCAATCTGTTAAAGATGCTGTTTCTCTATTTGCTGAAGGTGCTTTGTCTGGTGAAAAACCTGTCATTAAGAAGGCAAAATCTTATTTTGCTGAGAGTGTTTGGGCAAAGGAGTCACAACTTCACTTAGCCCAGAAAGAGCTCACAAAATTAAAGGAACAACTAAAGAATGCAGAAACTACCAAGGCTCAAGTTGAGGTGGAGCTTGAAAAGGCTAAAAGAGTGGTTGAGGAACTGACACAAAAGCTTAAAGTTCTCGGTGAATCCAGAGAGTCAGCAGTTCAGGCAACAGAAGATTCTAATAGTCAAGCAAAAAAGCTGAAAGAAGAAAAATGTGGTGATCTTGATGGAACCAATGGTGCTTGGAAAGAAGAGTTAGAAACTGCTGTAAAAGGTTATGCTTCTACCATTAAAGAACTTGATGTTGCAAAGCAAGAACTGAGTCAAATTCGTCAGGGGTATGATTTATCCTTGGAAGCAAGAGTTACTGCTCTCAAGCAAGCAGCAGAAGCTGAAGATGCAACGAAGGCAAACACCGAAAGAGCATCTGAGTTATCTAAAGAAATTTTGGCTGTACAGGAATCCATTGAGCCAATGAAGGCTGCATCTGTCCAAGCACAACAACTGCAAGAAGAGATATTAGCCGAGCATAACGTTCTGAGACAATCATATGAAGCTAAACTTGAAGAAATAAAGAAGAATTTGCTTGATTTAAAGAATGAATTCAATCCAGAGCTTACCAAAAATCTTGAAGTGCAGCTGTCTGAGACAATGAATGAAATTGGGAGTCTTCAAGAGCAAATGGAAAATACAAAGAAATCAGACCTGGACTCTTTGAAAAGTGTTACTGTGGGGCTTGATGATGCTAAGGAATTACTGCTGAAATTATCAGGACAAGAAAATTCTGTTAGAAGCACGGTGGAAGCTCTTAGGATGGAGCTGGAGAATGTGCAAAGAGAACACTATGAATTGAAGGAGAAAGAATCCAAAACTGAGTCAATTGTTGAGAGTCTGCGGTTAGAGCTCCAGAAAAGTGAGGCTGAAATTGAAGCCAACTTGGCCAAAGAATCAAAGGCTAGAGGTGCATCAGAGGAAATGATCTTGACATTGAACCAGTTGTTGTTGGAAACTGAAAATGCAAGGAGGGAAACACAAGCTATGAAGAATGAGGCAGCAGAATTGAAGATGGAAGCTGAAGTCACCAAACTTGTGTTTGAAGATGCAGAAATAAAGCTTAaagaagcattggaagaagcagaagaagctaaagcagcagaagcaagTGCTCTTGATCAGATTAGGGTCTTATCTGCGAGTACTAGTGATGCTGCTCATTCATCAACTTCTGAGTCTGGTGCAAAGATTACAATCTCAAGGGAGGAGTTTGAGTCCTTAGTTCATAAGGCTGAGGAGTGTGATAAATTAGCAGACATAAAAGTGGCTGCTGCCACAGCACAGGTTGAAGCTGCAAAGGCTAGTGAAAATGAAGTTCTTAAAAGGTTAGAGGAAACTCAGAAGGAAATTGAGGACATAAAGACTGAAACACAGGAAGCCATGAAAAGGGCAAACATGGCTGATGCAGCAAGGAGGGCAGTGGAGAGTGAGCTCAGAAAATGGCGCGAACGCGAACAGAAGAAAGCTGCAGAAGTTGCATCGCAAATTTTGGCTGAAACACGGATGTCACCAGAACTGTCTCCTCAGCACTACAGGATTCAGAAGCAGAATTCACCTCCAAACAAGGTGGAGATGAAGAAGTTAGAAAAAGGAAAAGTGTCAGTTTCAAAGAAAGTTCTGTTGCCAAATATCAGTGGCATCTTTCACAGGAAGAAGAACCAGGTTGAGGGAGGATCCCCTTCTTACCTTCCCGGGGAGAATCCTCAGTGA 1968 0.406 MVAKIRQSVVNSPNPTKPVVGEIDTSPPIQSVKDAVSLFAEGALSGEKPVIKKAKSYFAESVWAKESQLHLAQKELTKLKEQLKNAETTKAQVEVELEKAKRVVEELTQKLKVLGESRESAVQATEDSNSQAKKLKEEKCGDLDGTNGAWKEELETAVKGYASTIKELDVAKQELSQIRQGYDLSLEARVTALKQAAEAEDATKANTERASELSKEILAVQESIEPMKAASVQAQQLQEEILAEHNVLRQSYEAKLEEIKKNLLDLKNEFNPELTKNLEVQLSETMNEIGSLQEQMENTKKSDLDSLKSVTVGLDDAKELLLKLSGQENSVRSTVEALRMELENVQREHYELKEKESKTESIVESLRLELQKSEAEIEANLAKESKARGASEEMILTLNQLLLETENARRETQAMKNEAAELKMEAEVTKLVFEDAEIKLKEALEEAEEAKAAEASALDQIRVLSASTSDAAHSSTSESGAKITISREEFESLVHKAEECDKLADIKVAAATAQVEAAKASENEVLKRLEETQKEIEDIKTETQEAMKRANMADAARRAVESELRKWREREQKKAAEVASQILAETRMSPELSPQHYRIQKQNSPPNKVEMKKLEKGKVSVSKKVLLPNISGIFHRKKNQVEGGSPSYLPGENPQ 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02035 655 Coils Coil 62 117 - -
Cca05g02035 655 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED 3 632 - -
Cca05g02035 655 MobiDBLite consensus disorder prediction 1 25 - -
Cca05g02035 655 Coils Coil 363 383 - -
Cca05g02035 655 Coils Coil 398 425 - -
Cca05g02035 655 Coils Coil 512 549 - -
Cca05g02035 655 MobiDBLite consensus disorder prediction 593 607 - -
Cca05g02035 655 Coils Coil 433 460 - -
Cca05g02035 655 Coils Coil 242 269 - -
Cca05g02035 655 Pfam Weak chloroplast movement under blue light 22 573 IPR008545 -
Cca05g02035 655 Coils Coil 328 355 - -
Cca05g02035 655 Coils Coil 275 302 - -
Cca05g02035 655 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 3 632 - -
Cca05g02035 655 MobiDBLite consensus disorder prediction 589 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02035 Cca-Chr5 40131316 40134648 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02035 - - gmx:100817643 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02035 05 40131316 40134648 Cca05g02035 05 40131316 40134648 ECH
Cca09g01239 09 34616538 34621628 Cca05g02035 05 40131316 40134648 PCT