Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01237 ATGGGCAGTGTTGTTGAGTACTCTCCATTGTTTGAGACAAGAAGGGGCAGAGGAAGTCTCATCTACAGGCCCTTTGCAATCTCATTATTTGTGGCCATATGCTTCATATGGTTTTATAGAATTAGCCACAGCACAAAGGGTGAAGATGGAAAATGGGCATGGCTTGGTATGTTTGCTGCAGAGCTTTGGTTTGGCTTTTACTGGCTCCTCACTCAGGCCTTCAGGTGGAACCTTGTGTTCAGGCACCCCTTCAAAGATAGACTCTCTCAAAGATATGAGAAAAAGTTGCCAGGATTGGACATCTTTGTGTGCACAGCAGATCCAGATATTGAGCCACCAGTGATGGTGATTAACACAGTGCTATCTGTGATGGCTTATGAGTATCCAACTGAAAAGATGAGTGTGTATCTCTCAGACGATGCAGGGTCAGAAATCACGTTCTATGCACTGCTAGAGGCATCAAACTTTGCAAAATATTGGGTTCCATTCACCAAGAGGTTCAGGGTGGAGCCCAGGTCACCTGCTGCATATTTTAAGAGCATAGTCTCATCAGCCTACCCTTCTCACTCTAGTCAAACCCAAGAGTTGGTAGCCATTAAGAAATTGTACGAGGAAATGGTAAAACGCATTGATGATGCAACCAAGCTGGGTGAAGTACCCAAAGAAGCACGTTTAAAGCATAAGGGATTTTCTCATTGGAGTTCATATTCTTCTCGACGTGACCATGACACAATTCTTCAAATACTGCTTCATAAAAAGAACCCAAATAATTCGAAAGATGTAGATGGGTGTGATTTGCCAACTCTGGCGTATTTGGCTCGCGAGAAGAGGCCTCAATATTTCCACAACTTCAAAGCTGGAGCTATGAATTCATTGTTAAGGGTGTCTTCGAATATCAGCAACGGGAAAATCATTCTAAATGTAGACTGTGACATGTACTCAAACAATTCACAATCTGTGAGAGATGCTCTCTGCTTTTTCATGGATGAAGAGCAAGGCCACCAAATTGCTTATGTGCAGTTTCCTCAGAGTTTTGAGAATGCCACCAAGAATGATTTATATGGCTCTTCTCTAATATCAATTGCAGAGGTGGATTTCCGTGGTTTGGATGGTTGTGGTGGCCCTTTGTATATAGGAAGTGGCTGCTTTCACAAGAGAGAGTCTCTTTGTGGGATGAAGTTCACTGATCAATACAGGAATGATTGGAATAGTAAAGAAGATGATCAGTTTAAAGAAGCAAGCCTAGAGGAACTAGAACAACAATCAAAAGCTCTTGCAAGCTGCTCCTACGAGGAAAACACACTTTGGGGAAAAGAGATGGGTTTAAAATATGGGTGTCCAGTGGAGGATGTGATAACAGGATTATCTATACAGTGCCAAGGATGGAAATCAGTGTACTACATCCCACCAAGGAAGGCTTTCTTAGGTTTAGCTCCAACCACTTTGCCTCAAACACTTGTTCAACACAAGAGATGGTCTGAAGGAGACTTGCAGATTTTGCTTTCTAAATACAGCCCTGCATGGTATGGTTTTGGAAGGATCAGTTCGGGGCTCCAAATGGGATACTGTGCTTATTGCTTATGGGCACCTAATTGTTTAGCAACACTGTATTATTCCATCATCCCTTCAGTATACCTCCTTAAAGGCATTCCCTTGTTTCCAAAGGTGTCAAGTCCATGGTTCATACCTTTTGCATATGTCATTGTTGGGGAAACAACTTATAGTTTGTTGGAGTTTTTCTTCTGTGGGGGCACATTTCAAGGTTGGTGGAATGACCTAAGGATATGGTTATACAAAAGAACAAGCTCTTACCTATTTGCATGCATTGACACCATCTTGAAGCTTTTTGGGTTCTCAAATTCAACTTTTATAATCACGGCTAAGGTTACAGAAGAAGATGCTTTAAAACGCTATGAGAAGGAAATGATGGAGTTTGGAGCCTCCTCTCCAATGCTCACTATATTAGCCACTCTTGCTGTGCTAAATTTATTTTGTTTTCTTAGTGTGTTGAAGGATGCATTAATCCTAAGAGAAGGTGACCATGGAGTTTATGAAACAATGGTGTTGCAAGTTTTATTGTGTGGCTTTTTGGTTCTCATCAATTTGCCTATATACCAAGGACTTTTCTTAAGGAAGGACAGTGGAAGATTGCCTAGCTCTGTTGCAATCAAATCAATAATATTGGCTGTTGGTGTATTCATCTCCTACAGCTTGTCATGA 2220 0.4153 MGSVVEYSPLFETRRGRGSLIYRPFAISLFVAICFIWFYRISHSTKGEDGKWAWLGMFAAELWFGFYWLLTQAFRWNLVFRHPFKDRLSQRYEKKLPGLDIFVCTADPDIEPPVMVINTVLSVMAYEYPTEKMSVYLSDDAGSEITFYALLEASNFAKYWVPFTKRFRVEPRSPAAYFKSIVSSAYPSHSSQTQELVAIKKLYEEMVKRIDDATKLGEVPKEARLKHKGFSHWSSYSSRRDHDTILQILLHKKNPNNSKDVDGCDLPTLAYLAREKRPQYFHNFKAGAMNSLLRVSSNISNGKIILNVDCDMYSNNSQSVRDALCFFMDEEQGHQIAYVQFPQSFENATKNDLYGSSLISIAEVDFRGLDGCGGPLYIGSGCFHKRESLCGMKFTDQYRNDWNSKEDDQFKEASLEELEQQSKALASCSYEENTLWGKEMGLKYGCPVEDVITGLSIQCQGWKSVYYIPPRKAFLGLAPTTLPQTLVQHKRWSEGDLQILLSKYSPAWYGFGRISSGLQMGYCAYCLWAPNCLATLYYSIIPSVYLLKGIPLFPKVSSPWFIPFAYVIVGETTYSLLEFFFCGGTFQGWWNDLRIWLYKRTSSYLFACIDTILKLFGFSNSTFIITAKVTEEDALKRYEKEMMEFGASSPMLTILATLAVLNLFCFLSVLKDALILREGDHGVYETMVLQVLLCGFLVLINLPIYQGLFLRKDSGRLPSSVAIKSIILAVGVFISYSLS 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01237 739 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 241 407 IPR029044 -
Cca09g01237 739 Pfam Cellulose synthase 420 732 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca09g01237 739 Pfam Cellulose synthase 99 398 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca09g01237 739 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 7 733 - -
Cca09g01237 739 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN E1 7 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01237 Cca-Chr9 34597860 34604950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01237 9 730 Glycosyltransferase AT1G55850 57.851 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01237 - - gmx:100815825 1308.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01237 09 34597860 34604950 Cca09g01237 09 34597860 34604950 ECH
Cca09g01237 09 34597860 34604950 Cca05g02034 05 40120921 40125226 PCT