Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02034 ATGGGAGAAGATGATGATGCTGCTTTCTTCCACACAAAACAAGCATCATTCCGAGGCCTTTACAAGCTTTTTGCGTCCACCACCTTCATTTGGATCTACAGACTCGCAAACTACCCATCTGGGCCTGCGAGGTGGGCTTGGTTTTCTCTCTTCCTCTCTGAGTGGGCTTTTGGATTCTACTGGATCATCAGTCTGTTCGCTGGAGAATCCTCTATCAAACGCCTCTCAAGCACGCACTTCAACATAGATATGATGAGGAAAGTTTACCAGGAGTGGACATTTTTGTGTGTACGGCTGACCCAATGCTGGAGGCTCCATGTATGGGCTTCCATTTTCTCCAAACATTGGTTACCCTTTTGTTCAAGATTCAACGTTCAACATCGCTCACCCGAGCCATTCTTTGCCACCCAATATTCTACTACTAGTAATAACACTCACTATTCCCAAGCATGCTTATTCATCAAGAAACTGTATGAAGAAATGAAAAATGAGATTGAATCAGCCGTAGCAAAGGGGAAGGTTCCAGAGTCGTATATGAGAAATGAACACGTAGGATTCTCAGAATGGAACCCAAAAACAACAAAGCAGGATCACCACCCTATCGTGCAGATTGTAATCGATGGAAGGGACAAGGATGCTGTAGATGAAGACGGATTTCAACCGCCAACACTCGTATACCTATCACGCGAGAAAAGACCAAACTACCCTCACCACTTCAAAGCAGGAGCTATTAATGCATTGATAAGGGTGTCATCCGAGATAAGCAATGCCCCTTTCATCCTCAACTTGGATTGCGATATGTGCTCCAATAATGCAGATACAATTAAAGAAGTACTATGCTTCTTCCTTGATCAAACAAAAGGCCACGATATAGCTTATGTGCAATTTCCACAGTGGTTTCATAACATCACCAAAAATGACCATTATGGAAATTCTTGTGTTGTCACCAATAAGTTTGAGCTAGCTGGCATAAGTGGATATGGAGCAGCCATGTTTTGTGGAACTGGTTCACGAATTGAACCAAGCATCCAAGGCTCTTGCCACTTGCACCTACGAGGAGGGAACTCAATGGGGAAAGGGGAGAAGGGATTAGTATATGGTATTCCCGTGGAAGACGTTGTGAGTGGCCTTGCAATCTCATGCAGGGGTTGGAAATCAATTTATTACAACCCGGAAAGGAAGGCTTTCGTGGGTGTAGCTCCAACAACCTTGGATGTGGCATTTGTTCAGCATAAGAGGTGGTCAGAAGGCACGTTCCAGATCTTCTTATCAAAGTATTGCCCTTTCATTTATGGGCATGGGAAGATACACTTGGGTGTACAAATGGGGTATTGCGTTTACCTCTTATGGGCTCCTATGTCCCTACCCTTTCTGTGTTATGTCATTGTCCCTCCTATTTGCTTGCTTCATGGCATTCCCTTGTTCCCAAAGCTTTCAAGCATTTGGGTCCTTCCATTTGCATATGCATTTCTTGCAACCTATGGCTATAGCTTGTGTGAGTATTTGAGCTGTGGGCACCCAGCAAAGGGTTGGTGGAACTTACAAAGAATCAAGCTCATGCATAGAACCACCTCATATTTCTTTGGTTTCATTGACACCGTGACCAAACAATTAGGACTATCACAGACAAACTTTGCCATCACAGATAAAGTGGTAACTGAGGACGTGCAAACGAGATATGAGCAAGAGGTCATTGATTTTGGAGGCTCCTCAAATTCAATCATGTTAATCATATTGGCAACAGTGGCATTGCTAAACCTTTTTGGTCTCGTTGGGGGAATCAAGAGGATTCTAGTGGACATGGAATTCAGCTCAAGCCAATTTGTGGTGCAGATTGCACTGAGTTCATTGGTAGCGATGATCAATTGTATGTCCTGTTAA 1881 0.4381 MGEDDDAAFFHTKQASFRGLYKLFASTTFIWIYRLANYPSGPARWAWFSLFLSEWAFGFYWIISLFAGESSIKRLSSTHFNIDMMRKVYQEWTFLCVRLTQCWRLHVWASIFSKHWLPFCSRFNVQHRSPEPFFATQYSTTSNNTHYSQACLFIKKLYEEMKNEIESAVAKGKVPESYMRNEHVGFSEWNPKTTKQDHHPIVQIVIDGRDKDAVDEDGFQPPTLVYLSREKRPNYPHHFKAGAINALIRVSSEISNAPFILNLDCDMCSNNADTIKEVLCFFLDQTKGHDIAYVQFPQWFHNITKNDHYGNSCVVTNKFELAGISGYGAAMFCGTGSRIEPSIQGSCHLHLRGGNSMGKGEKGLVYGIPVEDVVSGLAISCRGWKSIYYNPERKAFVGVAPTTLDVAFVQHKRWSEGTFQIFLSKYCPFIYGHGKIHLGVQMGYCVYLLWAPMSLPFLCYVIVPPICLLHGIPLFPKLSSIWVLPFAYAFLATYGYSLCEYLSCGHPAKGWWNLQRIKLMHRTTSYFFGFIDTVTKQLGLSQTNFAITDKVVTEDVQTRYEQEVIDFGGSSNSIMLIILATVALLNLFGLVGGIKRILVDMEFSSSQFVVQIALSSLVAMINCMSC 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02034 626 Pfam Cellulose synthase 361 616 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca05g02034 626 Pfam Cellulose synthase 109 337 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca05g02034 626 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 358 623 - -
Cca05g02034 626 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 108 337 - -
Cca05g02034 626 SUPERFAMILY Nucleotide-diphospho-sugar transferases 204 426 IPR029044 -
Cca05g02034 626 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 108 337 - -
Cca05g02034 626 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 10 65 - -
Cca05g02034 626 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 358 623 - -
Cca05g02034 626 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 10 65 - -
Cca05g02034 626 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 192 401 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02034 Cca-Chr5 40120921 40125226 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02034 109 610 Glycosyltransferase AT1G55850 43.609 2.68e-149 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02034 - - gmx:100816849 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02034 05 40120921 40125226 Cca05g02034 05 40120921 40125226 ECH
Cca09g01237 09 34597860 34604950 Cca05g02034 05 40120921 40125226 PCT