Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01236 atgggagatgaggagTATTATCCATTGTTTGAGACAAGAAGAGGCAGAGGAAGAGTAATTTACATAATGTTGTCATTTTCATTGTTTGTGGGAATTTGGTTCATGTGGTTTTACAGAGTGAGTCACATACCAAGAGAAGGTGAAGATGGGAGATGGGCTTGGATTGGTTTGCTTTCTGTGGAACTATGGTTTGGTCTTTACTGGCTCCTTAGGCACACCTTCAGATGGAACCTTGTCTTCAGACAACCTTTCAGACACACTCTCTCTCAGAGATATGAGAAGATACTGCCAAGAGTGGACGTGTTTGTGTGCACAGCAGATCCAGTAATTGAGCCACCAATGATGGTGATTAACACAGTGCTATCAGTTATGGCTTATGACTATCCAACAGAAAAACTGAGTGTGTATCTCTCAGATGATGCTGCATCAGATATCACCTTCTATGCTCTCTCTCAGGCTTCCATTTTTGCCAAACAATGGCTTCCCTTCTGCAAGAGATTCAAGGTGGACCCCACCTCACCGGCTGCTTTTTTCAAAACTATAGCCTCCACCACTCACTCAAGTAGTGATATTGCCAAAGAATTTGCCACCATCAAGAAATTGTACCAAGATATGGAAAGTCGAGTAGAGAATGCAGCCAAGGAGGGTCAAGTACCAAAAGAAGTACACTCAAAGCATAAAGGATTTTCTCAGTGGGATTCTTATTCTTCTCGGCGTGACCATGACACAATTCTTCAAATACTACTTGATGGAAAGGACTCGAGTTCCAAAGATGTAGATGGGCAAGTTATGCCAATATTGGTATATTTGGCTCGCGAGAAGAGACCCCAAGTGCCACATAACTTCAAAGCTGGAGCCATGAATTCATTGATAAGGGTGTCATCAATGATTAGCAATGGGGAAATTATTCTTAATGTAGATTGTGACATGTACTCAAACAATTCCCAATCTCTAAGGGATGCACTCTGCTTCTTCATGGATGAAGTTAAAGGCCATCAAATCGCTTTTGTGCAGACTCCACAGTGTTTTGAGAATATCCAGAAGAATGATCTATATGGAGGGGCTCTACTAGTAAGTTATGAGGTGGAATTCCATGGTATGGATGCACTTGGTGGGCCTTTGTACATTGGAACTGGCTGTTTTCACAGAAGAGATATACTATGTGGAAGAAAGTTCAATGACCAATACAAGAATGATTGGAATGGATCTAAAAATATTGATCATATGAAAGAAGCAAGCTTGCATGAACTGGAAGAAAAATCAAAGGCTCTTGCTAGTTGTACCTTTGAGGAAAACACATTATGGGGAAAAGAGATGGGACTGCAATATGGTTGCTCAGTAGAAGATGTGATAACAGGATTGTCTATTAAATGTAGAGGATGGAAATCAGTGTTTTATAATCCTGAAAGGAGAGCTTTCTTAGGTGTTGCTCCAACCACCTTGCCAGAAGCACTAGTTCAACATAAGAGATGGTCTGAAGGAGGCTTTCAAATTCTGCTTTCTAAGTATAGTTCTGCATGGTATGCTTGGGGATTCGTCAGTCCATTCCTTCAAATGGCATATTGTTACTATAATCTATGGGTGTTTACTTCCTGGCCAACTCTATATTACTGCACCATCCCTTCACTGTATCTCCTCAAAGGCATTCCCTTGTTTCCACAGATGTCAAGTCCATGGTTCATACCTTTTGCATATGTCATGCTTGGGGATTCTTTTTACTGCTTGTTAGAGTTTTTGTGGTCTGGAGGCACAATCAAGGGTTGGTGGAATGACCTAAGGATGTGGCTTTACAAGAGAACAACCTCTTACCTCTTTGCTTTTATTGATACCATTTTGAAGCTTTTCGGGTTTTCAGAATCAGCCTTCGTGATATCTGCAAAGGTGGCAGAAGAAAACGTTTCCCAACGATATGAAAAAGAGGTTATGGAGTTTGGAAACTCATCACCAATGCTCACTTTACTGTCAACACTTGCATTGCTCAACTTGTTTTGTCTTCTTGGCATGTTACTAAAGCAAGTATTCATCAGTGAAGGGGGTCTCAGAAGTTGTGAGACAATGGCATTGCAAGTTCTCCTAAGTGGGGTTTTGGTTCTCATCAATGTACCTGTGTACCAAGGCCTCTACCTAAGAAAAGACAAGGGAAGATTACCAACATCTGTTGCATTTAAATCTACAGCATTGGCTCTAAGTGCATGTGTTCTCTTTATTGCCATAAGTTAA 2220 0.4068 MGDEEYYPLFETRRGRGRVIYIMLSFSLFVGIWFMWFYRVSHIPREGEDGRWAWIGLLSVELWFGLYWLLRHTFRWNLVFRQPFRHTLSQRYEKILPRVDVFVCTADPVIEPPMMVINTVLSVMAYDYPTEKLSVYLSDDAASDITFYALSQASIFAKQWLPFCKRFKVDPTSPAAFFKTIASTTHSSSDIAKEFATIKKLYQDMESRVENAAKEGQVPKEVHSKHKGFSQWDSYSSRRDHDTILQILLDGKDSSSKDVDGQVMPILVYLAREKRPQVPHNFKAGAMNSLIRVSSMISNGEIILNVDCDMYSNNSQSLRDALCFFMDEVKGHQIAFVQTPQCFENIQKNDLYGGALLVSYEVEFHGMDALGGPLYIGTGCFHRRDILCGRKFNDQYKNDWNGSKNIDHMKEASLHELEEKSKALASCTFEENTLWGKEMGLQYGCSVEDVITGLSIKCRGWKSVFYNPERRAFLGVAPTTLPEALVQHKRWSEGGFQILLSKYSSAWYAWGFVSPFLQMAYCYYNLWVFTSWPTLYYCTIPSLYLLKGIPLFPQMSSPWFIPFAYVMLGDSFYCLLEFLWSGGTIKGWWNDLRMWLYKRTTSYLFAFIDTILKLFGFSESAFVISAKVAEENVSQRYEKEVMEFGNSSPMLTLLSTLALLNLFCLLGMLLKQVFISEGGLRSCETMALQVLLSGVLVLINVPVYQGLYLRKDKGRLPTSVAFKSTALALSACVLFIAIS 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01236 739 Coils Coil 195 215 - -
Cca09g01236 739 SUPERFAMILY Nucleotide-diphospho-sugar transferases 113 552 IPR029044 -
Cca09g01236 739 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 4 736 - -
Cca09g01236 739 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 89 174 IPR029044 -
Cca09g01236 739 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 236 395 IPR029044 -
Cca09g01236 739 Pfam Cellulose synthase 99 397 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca09g01236 739 Pfam Cellulose synthase 420 738 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca09g01236 739 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 4 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01236 Cca-Chr9 34578336 34588033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca09g01236 8 732 Glycosyltransferase AT1G55850 56.753 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01236 - - gmx:100785532 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01236 09 34578336 34588033 Cca09g01236 09 34578336 34588033 ECH
Cca05g02032 05 40110895 40117909 Cca09g01236 09 34578336 34588033 PCT