Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02032 ATGGATAGCAGTGAAAAGTATTCATTATTTGAGACTAAGAGGGATAGAGGAAGGCACTTTCGAAGGCTCTTTTCTATCTCTGTGTTTGTGGCCATATGCTTCATCTGGGCTTACAGATTGACCCACATACCCACAAACCATGGATTATGGGCTTTCCTTGGTTTGTTTGCCGCAGAACTCTGGTCCGGCCTCTACTGGCTCTTGGGCCAAGCCCTCCGCTGGAACCGCGTCTTCAGAAAACCCTTCCACAACACACTCTCTCAAAGGTACGAGAATAGTTTGCCAGGAGTAGACATACTTGTGTTCACAGCAGAGCCAGTGATTGAACCACCTATGATGGTGATTAATACAATATTATCTGTAATGGCTTATGACTATCCAGTTGAAAAGCTTAGTGTGTATCTGTCGGATGATGCTGGATCAGAGATAACTTTTTATGCTCTTTTAGAGGCCTCTACCTTTGCCAAGCACTGGCTACCATTCTGCAAGAGGTTCAAGGTGGAACCAAGATCACCTGAAGCTTATTTTACTATCTATGTCTCATCAACTCCACACGACCTTAATCATGCCAAAGACTTGGCAGCCATCAAGAAATTATACGAAGATATGAAAAAACGAATAGAAGACGCAATCAAGTTAGGTGAAATACCTAGCAAAGCACGTTCAAAGCATAATGAATTTTCTCAATGGGATTCATATTCATCACGACATGATCATGGGACAATTCTAAAAATATTGCTTCATCCAAATGACTCACATTCGAAGGATGTAGATGGGTTTGTTTTGCCAACTTTGGTATATATGTCTCGTGAGAAGAGACCCCAATATCACCACAACTACAAAGCGGGAGCCATGAATTCATTGTTAAGAGTGTCTTCAATGATTAGCAATGCGAAAATCATTCTAATTCTAGATTGTGACATGCACTCAAACCATTCACGATCAGTACGAGATGCTCTTTGTTTTTTCATGGATGAAGAGAAAGGCCAAGAAATTGGTTTTGTGCAGTTTCCACAAAACTTTGACAATGTGGGTAAGAATGATTTATATGGGAATGCTTTATCAGTACTTATGGAGGTGGAGCTCCATGGTGCAGACGGTTATGGTGGACCTTTGTTCATTGGAACTTGTTGCTTTCATAAAAGAGACGCTCTTTCTGGGAAGAAGTTTAATAATGGTCTATACAAAAATGATTGGAATGATGAGAATGAGTTGATTAAGGCAAACCTGCAAGAACTAGAAGCAGAATCAAAGGCTCTTGCAAGCTGCAACTACGAGGAAAACACTTTATGGGGAAAAGAGATTGGTGCAATATATGGGAGTCTAGTGGAGGATGTAATAACAGGGTTGTGGATACAATTCCAAGGATGGAAATCAGTGTACTACAACCCAACAAGGAAGGCTTTTCTTGGCATTGCTCCAACTACATTGCTTCACACATTAGTTCAACAAAAGAGGTGGGCTGAAGGCGAGTTTCAAATTTTGTTTTCTAAGTACAGTCCTACGTGGTATGGTCATGGAAAGATCAAGTTAGGCCTAATATTGGGATATTGCCACTACAACTATTGGGCAACCACTTGTTGCCCAATGCTATATTACTCAATCATCCCTTCACTTTCTCTACTAAAAGGCATTTCCTTGTTTCCAAAGATGTCTAGCCCATGGTCAATACCATTCACATTTGTAATACTAGCAGAAAGTACTTCCAGTTTAGTTGAGGGTTTGATTCTTGGAGGCACAATACAGGGTTGGTGGAATGGCCTAAGGATGTGGTTATACATAGGAACAACTTCTTACCCTTTTGCTTTCATTAAAGTTGTCTTGAAATTCTTTGGTCTTTCAGATTTCTCTTATAATATCACAACTAAGATCATCCAAGATGATGTTTCCCAACGTTATGAGAAACAAGTCATGGAATTTGGAACCTCTTCTCCATTTTTCACTATACTAACAACAATCGCATTGCTCAATTTATTTTGTTTACTTGCTACTTTAAAGGAGTTACCACTTAGTGAAGGTATGGGATTTCAAGTTCTATTGTGTGGGATTTTGGTTTTCATCAATTTTCCAATATACCAGGGACTTTTTCTAAGAAAGGACAAGGGTAGATTGCCAAGCTCTTGTGCTATTAAATCCATTGCATTAGCTTTAAGTTCATGTATCCTCTTCAAAATATTGAACTGA 2184 0.3951 MDSSEKYSLFETKRDRGRHFRRLFSISVFVAICFIWAYRLTHIPTNHGLWAFLGLFAAELWSGLYWLLGQALRWNRVFRKPFHNTLSQRYENSLPGVDILVFTAEPVIEPPMMVINTILSVMAYDYPVEKLSVYLSDDAGSEITFYALLEASTFAKHWLPFCKRFKVEPRSPEAYFTIYVSSTPHDLNHAKDLAAIKKLYEDMKKRIEDAIKLGEIPSKARSKHNEFSQWDSYSSRHDHGTILKILLHPNDSHSKDVDGFVLPTLVYMSREKRPQYHHNYKAGAMNSLLRVSSMISNAKIILILDCDMHSNHSRSVRDALCFFMDEEKGQEIGFVQFPQNFDNVGKNDLYGNALSVLMEVELHGADGYGGPLFIGTCCFHKRDALSGKKFNNGLYKNDWNDENELIKANLQELEAESKALASCNYEENTLWGKEIGAIYGSLVEDVITGLWIQFQGWKSVYYNPTRKAFLGIAPTTLLHTLVQQKRWAEGEFQILFSKYSPTWYGHGKIKLGLILGYCHYNYWATTCCPMLYYSIIPSLSLLKGISLFPKMSSPWSIPFTFVILAESTSSLVEGLILGGTIQGWWNGLRMWLYIGTTSYPFAFIKVVLKFFGLSDFSYNITTKIIQDDVSQRYEKQVMEFGTSSPFFTILTTIALLNLFCLLATLKELPLSEGMGFQVLLCGILVFINFPIYQGLFLRKDKGRLPSSCAIKSIALALSSCILFKILN 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02032 727 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 250 468 IPR029044 -
Cca05g02032 727 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN E1 7 722 - -
Cca05g02032 727 Coils Coil 193 213 - -
Cca05g02032 727 Coils Coil 396 416 - -
Cca05g02032 727 Pfam Cellulose synthase 412 723 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca05g02032 727 Pfam Cellulose synthase 97 388 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca05g02032 727 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 7 722 - -
Cca05g02032 727 SUPERFAMILY Nucleotide-diphospho-sugar transferases 111 524 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02032 Cca-Chr5 40110895 40117909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02032 9 726 Glycosyltransferase AT1G55850 53.361 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02032 - - gmx:112999362 1159.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02032 05 40110895 40117909 Cca05g02032 05 40110895 40117909 ECH
Cca05g02032 05 40110895 40117909 Cca09g01236 09 34578336 34588033 PCT