Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g01234 ATGTCGGAAAAGGGTCGGCCACTACCAAAATTTGGTGAATGGGACGTCAATGATCCAGCCTCAGCTGAGGGGTTCACAGTGATTTTTAACAAGGCTAGGGATGAGAAAAAGACAGGTGGCAATCCTGAGTCTCCTGCAAAGACTGCCGCTGATCCTCATAGCAAACCTGCAGTAGATCCTGGCAAAACTCAGACTAAAAAATGGTTTTGCTGCATGCAAAACCCTCCTGCCGAATCATAA 240 0.4708 MSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNPESPAKTAADPHSKPAVDPGKTQTKKWFCCMQNPPAES 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g01234 79 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 77 IPR040387 -
Cca09g01234 79 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Cca09g01234 79 MobiDBLite consensus disorder prediction 30 67 - -
Cca09g01234 79 PANTHER RPM1-INTERACTING PROTEIN 4-LIKE 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g01234 Cca-Chr9 34569218 34572770 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g01234 - - gmx:100305826 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01234 09 34569218 34572770 Cca09g01234 09 34569218 34572770 ECH
Cca09g01234 09 34569218 34572770 Cca05g02031 05 40107305 40109029 PCT